#chrom5p	start5p	end5p	chrom3p	start3p	end3p	chimera_cluster_id	score	strand5p	strand3p	transcript_ids_5p	transcript_ids_3p	genes5p	genes3p	type	distance	total_frags	spanning_frags	unique_alignment_positions	isoform_fraction_5p	isoform_fraction_3p	breakpoint_spanning_reads	chimera_ids
chr20	49411467	49411710	chr17	59445688	59470198	CLUSTER40	196	+	+	uc002xvq.2:0-315,uc002xvr.2:0-315,uc002xvq.2:0-243,uc002xvs.2:0-315,uc002xvp.1:0-315,uc002xvr.2:0-243,uc002xvs.2:0-243,uc002xvp.1:0-243	uc002izc.3:156-2099,uc002iyy.3:1926-2954,uc002iza.3:1204-2298,uc002iyw.3:2534-3719,uc002izb.3:20-2219,uc002izc.3:1071-2099,uc002iyz.3:1249-2343,uc002iyu.3:2534-3562,uc002izb.3:935-2219,uc002iyv.3:2579-3607	BCAS4	BCAS3	Interchromosomal	None	196	75	187	0.98	0.907407407407	>565265/2;pos=2535;strand=-,CTGACCCCCGATCCTGGGGCCGAGGTACCTTTGACAGGAGCGTGACCCCG,>2886610/1;pos=2552;strand=-,GGCCGAGGTACCTTTGACAGGAGCGTGACCCCGCTGGAGGTGTGCGGGAG,>5259982/2;pos=2541;strand=-,CCCGATCCTGGGGCCGAGGTACCTTTGACAGGAGCGTGACCCTGCTGGAG,>3071044/1;pos=2541;strand=-,CCCGATCCTGGGGCCGAGGTACCTTTGACAGGAGCGTGGCCCTGCTGGAG,>7122537/1;pos=2535;strand=-,CTGACCCCCGATCCTGGGGCCGAGGTACCTTTGACAGGAGCGTGACCCTG,>4726015/1;pos=2536;strand=-,TGACCCCCGATCCTGGGGCCGAGGTACCTTTGACAGGAGCGTGACCCTGC,>7393736/1;pos=2552;strand=-,GGCCGAGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAG,>710588/2;pos=2547;strand=-,CCTGGGGCCGAGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGC,>7684527/1;pos=2548;strand=-,CTGGGGCCGAGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCG,>8325521/2;pos=2527;strand=-,CGCTCTTCCTGACCCCCGATCCTGGGGCCGAGGTACCTTTGACAGGAGCG,>4538441/1;pos=2531;strand=-,CTTCCTGACCCCCGATCCTGGGGCCGAGGTACCTTTGACAGGAGCGTGAC,>4892538/2;pos=2554;strand=-,CCGAGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAGCC,>2038356/2;pos=2550;strand=-,GGGGCCGAGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGG,>2096873/2;pos=2551;strand=-,GGGCCGAGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGA,>7403320/2;pos=2529;strand=-,CTCTTCCCGACCCCCGATCCTGGGGCCGAGGTACCTTTGACAGGAGCGTG,>2747375/2;pos=2537;strand=-,GACCCCCGATCCTGGGGCCGAGGTACCTTTGACAGGAGCGTGACCCTGCC,>1065464/1;pos=2533;strand=-,TCCTGACCCCCGATCCTGGGGCCGAGGTACCTTTGACAGGAGCGTGACCC,>7740789/2;pos=2538;strand=-,ACCCCCGATCCTGGGGCCGAGGTACCTTTGACAGGAGCGTGACCCTGCTG,>6311404/1;pos=2537;strand=-,GACCCCCGATCCTGGGGCCGAGGTACCTTTGACAGGAGCGTGACCCTGCT,>2138088/1;pos=2553;strand=-,GCCGAGGTACCTGTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAGG,>1210419/1;pos=2537;strand=-,GACCCCCGATCCTGGGGCCGAGGTACCTTTGACAGGAGCGTGACCCTGCA,>8351711/2;pos=2542;strand=-,CCGATCCTGGGGCCGAGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGG,>2716348/1;pos=2529;strand=-,CTCTTCCTGACCCCCGATCCTGGGGCCGAGGTACCTTTGACAGGAGCGTG,>7757869/2;pos=2554;strand=-,CCGAGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAGCG,>3787841/1;pos=2546;strand=-,TCCTGGGGCCGAGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTG,>99635/1;pos=200;strand=+,CGCGCGAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCGAGGTACCT,>5611938/2;pos=202;strand=+,CGCGAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCGAGGTACCTTT,>4862989/1;pos=203;strand=+,GCGAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCGAGGTACCTTTG,>7037670/2;pos=203;strand=+,CCGAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCGAGGTACCTTTG,>4757058/2;pos=204;strand=+,CGAGCTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCGAGGTACCTTTGA,>6462596/1;pos=208;strand=+,CTCGCGCTCTTCCTGACCCCCGATCCTGGGGCCGAGGTACCTTTGACAGG,>773526/2;pos=210;strand=+,CGCGCTCTTCCTGACCCCCGATCCTGGGGCCGAGGTACCTTTGACCGGAG,>608211/2;pos=210;strand=+,CGCGCTCTTCCTGACCCCCGATCCTGGGGCCGAGGTACCTTTGACAGGAG,>6439228/1;pos=219;strand=+,CCTGACCCCCGATCCTGGGGCCGAGGTACCTTTGACAGGAGCGTGACCCT	C1166663,C1166259,C1166653,C1166650,C1166252,C1166250,C1166446,C1166444,C1166239,C1166655,C1166235,C1166843,C1166841,C1166826,C1166433,C1166642,C1166437,C1166646,C1166458,C1166662,C1166667,C1166666,C1166429,C1166247,C1166453,C1166454,C1166243,C1166457,C1166264,C1166263,C1166260,C1166441,C1166850,C1166854,C1166855,C1166638,C1166851,C1166838,C1166834,C1166830
chr20	47538275	47538547	chr20	46286151	46365686	CLUSTER27	23	+	-	uc002xtx.3:0-272,uc002xtx.3:0-303	uc010ghv.1:505-1644,uc002xto.2:505-3897,uc002xtr.2:844-4227,uc002xtq.2:844-4236	ARFGEF2	RP5-1049G16.1,SULF2	Intrachromsomal_Diverging	-1123466	23	9	22	0.793103448276	0.377049180328	>1160245/2;pos=507;strand=-,CAGGGCCTGCCAGGTGGCGCTCGGTTCCATGCAGGTGATGAACAAGACCC,>274890/1;pos=520;strand=-,GTGGCGCTCGGTTCCATGCAGGTGATGAACAAGACCCGGCGCATCATGGA,>6474294/1;pos=512;strand=-,CCTGCCAGGTGGCGCTCGGTTCCATGCAGGTGATGAACAAGACCCGGCGC,>3684733/2;pos=510;strand=-,GGCCTGCCAGGTGGCGCTCGGTTCCATGCAGGTGATGAACAAGACCCGGC,>7533806/1;pos=232;strand=+,CCAGCACTCCCAGCTGCGCAGGGCCTGCCAGGTGGCGCTCGGTTCCATGC,>7128797/2;pos=238;strand=+,CTCCCAGCTGCGCAGGGCCTGCCAGGTGGCGCTCGGTTCCATGCAGGTGA,>1273540/1;pos=241;strand=+,CCAGCTGCGCAGGGCCTGCCAGGTGGCGCTCGGTTCCATGCAGGTGATGA,>4321635/1;pos=248;strand=+,CGCAGGGCCTGCCAGGTGGCGCTCGGTTCCATGCAGGTGATGAACAAGAC	C1157643,C1157642,C1157638,C1157639,C1157634,C1157635,C1157636,C1157637
chr17	57183959	57184952	chr17	57915656	57917950	CLUSTER11	8	+	+	uc002ixb.2:0-993	uc010woi.1:1156-2080,uc010woj.1:1045-1969,uc010woh.1:1079-2003,uc002ixu.3:1247-2171,uc010wog.1:1111-2035	BC017255	TDC1,TMEM49	Intrachromosomal	589235	8	4	8	0.727272727273	0.0733944954128	>3251044/2;pos=1256;strand=-,ATTGCAAGAATTGAAGTGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAG,>6250017/2;pos=1253;strand=-,AAGATTGCAAGAATTGAAGTGCTGTCCCCGGCATAGGTCCATCTCTGCAG,>424778/1;pos=963;strand=+,GCCAGATGTGTAAAGATTGCAAGAATTGAAGTGCTGTCCCCGGCATAGGT,>2680415/1;pos=972;strand=+,GTAAAGATTGCAAGAATTGAAGTGCTGTCCCCGGCATAGGTCCATCTCTG	C0860763,C0860769,C0860766,C0860772,C0860758
chr14	96968720	96968937	chr14	96904172	96955112	CLUSTER32	7	+	+	uc001yfq.2:0-217,uc001yfp.2:0-217,uc001yfo.2:0-217,uc001yfr.2:0-217,uc010twv.1:0-217,uc010avp.2:0-217	uc001yfn.2:653-2647	PAPOLA	AK7	Adjacent_Complex	-13607	7	3	7	0.14	1.0	>311113/1;pos=181;strand=+,GTGACTGGGCGGTGCCGGCGCCGGAGACGATGCCGTTGCCAGAAAATTTG,>7950270/2;pos=183;strand=+,GACTGGGCGGTGCCGGCGCCGGAGACGATGCCGTTGCCAGAAAATTTGCA,>8380884/2;pos=196;strand=+,CGGCGCCGGAGACGATGCCGTTGCCAGAAAATTTGCAGCATACGTAGTTG	C1995648,C2269236,C0617325,C0617562,C0617413,C0617362
chr1	114354332	114355070	chr1	114442494	114443859	CLUSTER18	6	-	+	uc001edr.2:0-738,uc001edq.2:0-738	uc001edv.1:368-1733	RSBN1	AK123199	Adjacent_Diverging	44186	6	5	6	0.545454545455	0.666666666667	>4584498/1;pos=367;strand=-,GCCTCTGATCAAAGCCCCCAAGAGAGGTTCTCAAGAAGGAAAAGGAGCAG,>3751213/1;pos=372;strand=-,TGATCAAAGCCCCCAAGAGAGGTTCTCAAGAAGGAAAAGGAGCAGACACC,>7962417/2;pos=374;strand=-,ATCAAAGCCCCCAAGAGAGGTTCTCAAGAAGGAAAAGGAGCAGACACCGG,>7372003/2;pos=693;strand=+,GGGGAGAGGACTGGAGGGGTGCCTCTGATCAAAGCCCCCAAGAGAGGTTC,>7860672/2;pos=707;strand=+,AGGGGTGCCTCTGATCAAAGCCCCCAAGAGAGGTTCTCAAGAAGGAAAAG	C0095240,C0095265
chr17	57970443	57992064	chr17	57917129	57917950	CLUSTER50	6	+	+	uc010woo.1:0-208,uc010ddj.1:0-483,uc010wom.1:0-612,uc002ixy.2:0-483	uc002ixu.3:1350-2171,uc010wog.1:1214-2035,uc010woi.1:1259-2080,uc010woh.1:1182-2003,uc010woj.1:1148-1969	RPS6KB1	TDC1,TMEM49	Intrachromosomal_Complex	-52492	6	6	5	0.166666666667	0.0594059405941	>7037154/2;pos=1348;strand=-,ATATTTGCCATGAAGGTGCTTAAAAAGGGAGAAAACTGGTTGTCCTGGAT,>4552527/1;pos=442;strand=+,GCAAATACTGGGAAAATATTTGCCATGAAGGTGCTTAAAAAGGGAGAAAA,>3856419/2;pos=449;strand=+,CTGGGAAAATATTTGCCATGAAGGTGCTTAAAAAGGGAGAAAACTGGTTG,>3991808/2;pos=454;strand=+,AAAATATTTGCCATGAAGGTGCTTAAAAAGGGAGAAAACTGGTTGTCCTG,>1978219/1;pos=460;strand=+,TTTGCCATGAAGGTGCTTAAAAAGGGAGAAAACTGGTTGTCCTGGATGTT	C2033720,C2033721,C2033723,C2325630,C2325697,C2325694,C2325451,C0880448,C2325699,C2325696,C2325375,C2033718,C2033685,C2325446,C2325448,C0880523,C2325449,C0880521,C0880526,C0880524
chrX	16804560	16804712	chrX	16753350	16778994	CLUSTER53	5	+	+	uc010ney.1:0-152,uc004cxq.1:0-152	uc004cxp.2:268-2002,uc004cxo.2:268-1661	CXorf15	SYAP1,DKFZp686K221	Adjacent_Complex	-25565	5	4	5	0.555555555556	0.208333333333	>1934278/1;pos=129;strand=+,CGGCGACGCAGCCCGCGGCAGAAGACTATTTATTTAACTTTGCATCTGCT,>130790/2;pos=129;strand=+,CGGCGACGCAGCCCGCGGCAGCAGACTATTTATTTAACTTTGCATCTGCT,>5490135/2;pos=271;strand=-,GCGACGCAGCCCGCGGCAGAAGACTATTTATTTAACTTTGCATCTGCTGC,>7199036/2;pos=289;strand=-,GAAGACTATTTATTTAACTTTGCATCTGCTGCCACAAAAAAGATAACTGA	C2150287,C1799782,C1799783,C2150288
chr2	142237965	142889270	chr17	37219556	37265644	CLUSTER23	5	-	-	uc002tvj.1:0-1314	uc002hrg.2:467-6251,uc002hrk.1:488-6550,uc002hri.2:467-6615,uc002hrj.1:488-6636,uc002hrh.2:467-6815	LRP1B	TEM7,PLXDC1	Interchromosomal	None	5	2	4	0.833333333333	1.0	>4894296/2;pos=1292;strand=+,TGACGAAGGAGTACATTGTCAGGGAGGACAACCACAGCTATTATGTGTCC	C1075715,C1075717,C1075711,C1075709,C1075713
chr1	147931724	147931980	chr1	145004781	145005286	CLUSTER0	4	-	+	uc001eqn.2:0-180,uc009wjz.1:0-256,uc009wjy.1:0-256,uc001eql.2:0-256	uc001emi.3:0-505	FLJ39739	BC065231	Intrachromosomal_Converging	-2829840	4	0	4	1.0	1.0		C1887834,C1887840,C0125926,C0125918
chr1	144340526	144340773	chr1	145004781	145005286	CLUSTER13	4	-	+	uc001ekr.3:0-247,uc001ekt.3:0-247	uc001emi.3:0-505	LOC728855	BC065231	Intrachromsomal_Diverging	664007	4	0	4	0.16	1.0		C0119862,C0119877
chr1	143744201	143744587	chr1	145004781	145005286	CLUSTER15	4	-	+	uc001ejr.3:0-386,uc001ejp.3:0-386,uc009why.2:0-386	uc001emi.3:0-505	FLJ39739	BC065231	Intrachromsomal_Diverging	1260193	4	0	4	1.0	1.0		C1886386,C0119845,C0119818
chr6	33367540	33368371	chr15	41709302	41775760	CLUSTER16	4	+	+	uc011drg.1:0-831	uc001zny.2:0-5019	BC146941	RTF1	Interchromosomal	None	4	0	4	1.0	1.0		C2448576
chrM	12338	14645	chrM	1709	4262	CLUSTER25	4	+	+	uc004cox.3:0-2307	uc004cos.3:0-2553	MTND5	TVAS5	Intrachromosomal_Complex	-8075	4	0	4	1.0	1.0		C1796262
chr6_ssto_hap7	4847760	4848591	chr15	41709302	41775760	CLUSTER29	4	+	+	uc011juy.1:0-831	uc001zny.2:0-5019	BC146941	RTF1	Interchromosomal	None	4	0	4	1.0	1.0		C2671450
chr1	149576453	149576700	chr1	145004781	145005286	CLUSTER33	4	+	+	uc001esk.3:0-247,uc009wld.2:0-247,uc009wlb.1:0-539,uc001esl.3:0-247	uc001emi.3:0-505	BC110832,LOC728855	BC065231	Intrachromosomal_Complex	-4571166	4	0	4	0.16	1.0		C1888812,C0131661,C1888798,C0131654
chr6_qbl_hap6	4599758	4600589	chr15	41709302	41775760	CLUSTER38	4	+	+	uc011jbh.1:0-831	uc001zny.2:0-5019	BC146941	RTF1	Interchromosomal	None	4	0	4	1.0	1.0		C2643835
chr11	61560150	61560500	chr11	61605250	61634825	CLUSTER43	4	+	+	uc001nsg.2:0-350	uc001nsk.2:357-1740,uc001nsl.1:357-3148,uc010rlo.1:293-3084,uc001nsj.2:171-2962	FEN1	FADS2	Read_Through	19020	4	0	4	0.125	0.363636363636		C0309357,C0309345,C0309346,C0309347
chr12	120628101	120632513	chr12	120779133	120785317	CLUSTER54	3	-	-	uc001txo.2:0-30,uc001txo.2:0-133	uc001tye.1:854-2949,uc001tye.1:923-2949,uc001tye.1:797-2949	GCN1L1	MSI1	Intrachromosomal_Complex	146619	3	2	3	0.375	0.5	>828933/2;pos=873;strand=-,GAAAAGCCATTCCTCTCACTGCCTACGGACCAATGGCGGCGGCAGCGGCG,>5999729/2;pos=874;strand=-,AAAAGCCATTCCTCTCACTGCCTACGGACCAATGGCGGCGGCAGCGGCGG	C0502900,C0502899,C0502898
chr19	11071598	11097269	chr19	11015627	11033447	CLUSTER6	3	+	+	uc002mqe.2:0-1040,uc002mqj.3:0-787,uc002mqf.3:0-1043,uc010dxp.2:0-1119,uc010dxr.2:0-787,uc010dxs.2:0-787,uc010dxo.2:0-1043,uc002mqg.1:0-787,uc010dxq.2:0-787	uc010dxn.2:346-3010,uc002mpz.2:346-2966	SMARCA4	CARM1	Intrachromosomal_Complex	-38150	3	1	3	0.2	0.214285714286	>6050768/1;pos=1019;strand=+,CCAAATTACAGCAGGCCTCATGATGAAGATGTGTGTGTCTTTAAGTGCTC	C2045504,C2045486,C2045753,C2045682,C2045414,C0961630,C2045771,C2045396,C0961710,C2045664,C0961895,C0961755,C0961692,C2045593,C0961620,C0961877,C0961768,C2045575
chr19	17186591	17213367	chr19	17881234	17899377	CLUSTER7	3	+	+	uc002nfi.2:0-991,uc010eak.2:0-991,uc002nfj.1:0-897	uc010ebb.2:525-3120,uc010xpw.1:455-3050,uc002nhg.3:615-3224,uc002nhh.2:619-3214,uc010ebc.1:368-1034	MYO9B	FCHO1	Intrachromosomal	534423	3	1	3	0.75	1.0	>486870/2;pos=965;strand=+,ATCCTGGGTGCTGGCCCTGTGCTGGAGTGCAAGGAGGAAGTGGTGAGCAC	C0968398,C2047545,C0968421,C2047542,C2047540,C0968405,C0968415,C2047535,C0968413,C0968412,C0968403,C0968418,C0968408,C2047538,C0968401
chr9	139685777	139686810	chr9	139693554	139702192	CLUSTER46	3	+	+	uc004cje.3:0-358	uc004cjf.2:118-1702	TMEM141	KIAA1984	Read_Through	3033	3	1	3	0.1	1.0	>3208436/1;pos=322;strand=+,CTGGAGACCGGGCAGCTCCCCAAAGACAGGAGCACAGAGCAGTGTCGGGC	C1763614
chr20	30946153	30954269	chr2	25962253	26068432	CLUSTER3	4	+	-	uc002wxs.2:0-565,uc002wxr.1:0-565	uc002rgs.2:278-7173	ASXL1,ASXH1	ASXL2	Interchromosomal	None	4	0	3	0.666666666667	0.4		C1131772,C1131912
chr10	19778023	19896829	chr10	19981211	20023405	CLUSTER36	3	+	+	uc010qcq.1:0-1118	uc010qcr.1:69-641,uc010qcr.1:0-641	AK297683	AK297683	Read_Through	7954	3	0	3	1.0	0.5		C2194522,C2194521
chr12	58166383	58166911	chr12	58176893	58191367	CLUSTER1	2	+	+	uc001sqf.2:0-413,uc001sqg.2:0-413	uc010sse.1:106-2295,uc001sqh.2:106-2090,uc001sqi.2:106-2027,uc010ssf.1:106-1939	FAM119B	TSFM	Read_Through	212	2	2	2	1.0	0.0454545454545	>290602/1;pos=120;strand=-,AGCGCTGCAGGGCTGGGTCTCTTCTGCGTCAGTCGCCCCAGCCAAGGCAC,>3315856/2;pos=381;strand=+,CAGGCATCGTGGGGATCTTGGCAGCGCTGCAGGGCTGGGTCTCTTCTGCG	C0478622,C0478623,C0478620,C0478621,C0478624,C0478619,C0478618,C0478625
chr1	147874655	147874818	chr1	144480748	144481765	CLUSTER4	2	+	-	uc010paa.1:0-163	uc001ekz.3:184-767,uc001ela.3:220-1237,uc001eky.3:220-803	AK311108	LOC728875,BC021732	Intrachromsomal_Diverging	-3353661	2	2	2	1.0	0.0714285714286	>7005713/1;pos=120;strand=+,TGGCTCCGGGATGCGCGTGAGGCAAGTGACCTTGCGTGTAAAGGGGCCCG,>2623336/1;pos=240;strand=-,AAAGGGGCCCGCCTGGCAGGACGACTGAGCAAGTCCTTGGAAAACCAGAG	C2171714,C2171715,C2171716
chr1	147874655	147874818	chr1	149615765	149616784	CLUSTER5	2	+	+	uc010paa.1:0-163	uc001esk.3:248-1267,uc001esl.3:248-833	AK311108	LOC728855	Intrachromosomal	1682970	2	2	2	1.0	0.0606060606061	>7005713/1;pos=120;strand=+,TGGCTCCGGGATGCGCGTGAGGCAAGTGACCTTGCGTGTAAAGGGGCCCG,>2623336/1;pos=268;strand=-,AAAGGGGCCCGCCTGGCAGGACGACTGAGCAAGTCCTTGGAAAACCAGAG	C2171718,C2171717
chr1	143687146	143687309	chr1	144300514	144301536	CLUSTER19	2	+	-	uc001ejq.2:0-163,uc009whw.1:0-163	uc001ekt.3:248-1270,uc001eks.2:184-772,uc001ekr.3:248-836	CR610073,AK311108	LOC728855	Intrachromosomal_Converging	586333	2	2	2	1.0	0.0606060606061	>7005713/1;pos=120;strand=+,TGGCTCCGGGATGCGCGTGAGGCAAGTGACCTTGCGTGTAAAGGGGCCCG,>2623336/1;pos=268;strand=-,AAAGGGGCCCGCCTGGCAGGACGACTGAGCAAGTCCTTGGAAAACCAGAG	C1886369,C1886368,C1886370,C0119826,C0119827,C0119828
chr20	31172372	31172875	chr20	31052584	31115716	CLUSTER21	2	-	-	uc002wxx.2:0-503	uc002wxw.1:1167-2040	LOC284804	C20orf112	Read_Through	-12109	2	2	2	1.0	1.0	>5688855/1;pos=1169;strand=-,ATGTGCCGGTCAAGACGGGCTCGGGGGCAGATGGCCTGTCGGAGCCAGAG,>8211578/2;pos=476;strand=+,GGTGTATGTGCCGGTCAAGACGGGCTCGGGGGCAGATGGCCTGTCGGAGC	C1131921
chr1	143687146	143687309	chr1	144480748	144481765	CLUSTER24	2	+	-	uc001ejq.2:0-163,uc009whw.1:0-163	uc001ekz.3:184-767,uc001ela.3:220-1237,uc001eky.3:220-803	CR610073,AK311108	LOC728875,BC021732	Intrachromosomal_Converging	766567	2	2	2	1.0	0.0714285714286	>7005713/1;pos=120;strand=+,TGGCTCCGGGATGCGCGTGAGGCAAGTGACCTTGCGTGTAAAGGGGCCCG,>2623336/1;pos=240;strand=-,AAAGGGGCCCGCCTGGCAGGACGACTGAGCAAGTCCTTGGAAAACCAGAG	C1886371,C1886372,C1886373,C0119831,C0119830,C0119829
chr17	65821780	65909303	chr17	65548373	65689645	CLUSTER31	2	+	+	uc002jgf.2:0-5363,uc002jge.2:0-5741	uc002jgc.2:544-1986,uc002jgb.2:544-2105	BPTF	PITPNC1	Intrachromosomal_Complex	-132134	2	2	2	0.0740740740741	0.0769230769231	>1517719/2;pos=553;strand=-,TTGGCATCACTTGGAGCAAACTGCCTAGTTGGGCTAGAGCTGTTGTCCCC,>7462666/2;pos=5714;strand=+,CTAGACCGACCTTTGGCATCACTTGGAGCAAACTGCCTAGTTGGGCTAGA	C0892692,C0892691,C0892756,C0892755
chr11	65029432	65063461	chr11	65088015	65089899	CLUSTER34	2	+	+	uc001odk.2:0-1426,uc001odj.2:0-1978	uc001odl.2:95-1979	POLA2	CDC42EP2	Read_Through	17243	2	2	2	0.166666666667	0.333333333333	>6506224/2;pos=1935;strand=+,CAGATGTCCTCATCATCCCGTCAGAGCTGAGGTACTTCGTGAAGCTCCTC,>8351325/2;pos=1939;strand=+,TGTCCTCATCATCCCGTCAGAGCTGAGGTACTTCGTGAAGCTCCTCAGCC	C0337725,C0337736
chr1	147874655	147874818	chr1	144300514	144301536	CLUSTER37	2	+	-	uc010paa.1:0-163	uc001ekt.3:248-1270,uc001eks.2:184-772,uc001ekr.3:248-836	AK311108	LOC728855	Intrachromsomal_Diverging	-3533881	2	2	2	1.0	0.0606060606061	>7005713/1;pos=120;strand=+,TGGCTCCGGGATGCGCGTGAGGCAAGTGACCTTGCGTGTAAAGGGGCCCG,>2623336/1;pos=268;strand=-,AAAGGGGCCCGCCTGGCAGGACGACTGAGCAAGTCCTTGGAAAACCAGAG	C2171711,C2171712,C2171713
chr1	143687146	143687309	chr1	149615765	149616784	CLUSTER45	2	+	+	uc001ejq.2:0-163,uc009whw.1:0-163	uc001esk.3:248-1267,uc001esl.3:248-833	CR610073,AK311108	LOC728855	Intrachromosomal	5862272	2	2	2	1.0	0.0606060606061	>7005713/1;pos=120;strand=+,TGGCTCCGGGATGCGCGTGAGGCAAGTGACCTTGCGTGTAAAGGGGCCCG,>2623336/1;pos=268;strand=-,AAAGGGGCCCGCCTGGCAGGACGACTGAGCAAGTCCTTGGAAAACCAGAG	C1886374,C1886375,C0119833,C0119832
chr20	60639507	60640866	chr17	59759985	59926617	CLUSTER51	2	-	-	uc002ybs.2:0-1359	uc002izk.1:520-4562	TAF4	BRIP1	Interchromosomal	None	2	2	2	0.133333333333	0.0571428571429	>5878225/1;pos=514;strand=-,ACCAACATCCAGAACTTCCAGCTGCCCCCAGACTCCCCTGAAAAAACCAC,>3040691/1;pos=519;strand=-,CATCCAGAACTTCCAGCTGCCCCCAGACTCCCCTGAAAAAACCACTCTGG	C1184129
chr5	148880578	148881757	chr5	148874845	148892772	CLUSTER2	2	-	-	uc003lqz.2:0-1179	uc003lqw.1:1020-3148,uc010jha.1:936-3071,uc011dcb.1:183-2275,uc003lqv.1:451-2543,uc003lqx.1:936-3064,uc003lqy.1:936-3028,uc011dcc.1:535-2663	BC005905	CSNK1A1	Overlapping_Same	0	2	1	2	1.0	0.05	>2555629/2;pos=1138;strand=+,GCAGACCATCTACCAGCTGGGGAAAGAATCAATTATAAACAGTTATTCCT	C1448354,C1448355,C1448357,C1448351,C1448359,C1448349,C1448348
chr8	99129521	99129618	chr8	99042690	99048944	CLUSTER26	2	+	+	uc003yij.3:0-97	uc003yic.2:2587-4105,uc010mbj.1:492-950,uc003yid.2:2587-4048,uc010mbi.1:2091-2492,uc010mbh.1:2464-2922,uc003yie.1:2480-2938	POP1	MATN2	Intrachromosomal_Complex	-80576	2	1	2	0.285714285714	0.5	>6336032/1;pos=2604;strand=-,TCTGGCAGGTATCACTATGTATGCTGTTGGGGTAGGAAAAGCCATTGAGG	C1664699,C1664698,C1664701,C1664700,C1664697,C1664696
chr1	153895209	153895451	chr1	153965170	154002530	CLUSTER41	2	-	-	uc001fdb.3:0-242	uc001fdw.2:3927-5879,uc001fdw.2:3768-5879,uc010peh.1:3927-5423,uc009woq.2:2188-4140,uc009woq.2:2029-4140,uc010peh.1:3768-5423	GATAD2B	DKFZp434E2118,NUP210L	Intrachromosomal_Complex	69718	2	1	2	0.4	1.0	>3773428/2;pos=203;strand=+,GAGGAGGCGAGCTAGCCGGGAGTTACACCGCCACCGCCAGGTTTTTCTAC	C0141423,C0141430,C0141435,C0141436,C0141431,C0141424
chr17	42275388	42275529	chr17	42431101	42433956	CLUSTER44	2	-	-	uc002iga.2:0-141,uc002ifz.2:0-141	uc002igs.2:592-2633	ATXN7L3	FAM171A2	Intrachromosomal_Complex	155571	2	1	2	0.166666666667	0.285714285714	>3383418/1;pos=102;strand=+,GGAAATGTCTTTGTCTGGCCTGGATAACAGCAAACTAGAGGTGCCCGCTC	C0850071,C0850113
chr20	49411467	49411710	chr20	45838381	45850125	CLUSTER47	2	+	-	uc002xvs.2:0-243,uc002xvq.2:0-243,uc002xvr.2:0-243,uc002xvp.1:0-243	uc002xtc.1:3178-4567,uc002xsy.1:3029-4502,uc002xtb.1:3178-4651,uc010zxz.1:2860-4249,uc002xst.1:2888-4277,uc002xsw.1:3235-4708,uc002xtf.1:3316-4789,uc002xsr.1:845-2234,uc002xsz.1:2958-4431,uc010zxy.1:3359-4832,uc002xsu.1:2861-4334,uc002xsv.1:3026-4415,uc010ghr.1:2948-4421,uc010zya.1:3387-4860,uc002xta.1:3450-4839,uc010ghq.1:2120-3526,uc002xte.1:3249-4722,uc002xss.2:3440-4829,uc002xsx.1:3235-4624,uc002xtd.1:3103-4492	BCAS4	ZMYND8,KIAA1125	Intrachromsomal_Diverging	-3543573	2	1	2	0.333333333333	0.142857142857	>5646038/1;pos=858;strand=-,CCTGAGGCCGAGCTACTGCTCCTCAGCAGGAAGCGGATGCTGAGGTGAAC	C1166984,C1166375,C1166374,C1166399,C1166398,C1166371,C1166370,C1166373,C1166372,C1166796,C1166795,C1166417,C1166793,C1166792,C1166791,C1166790,C1166956,C1166971,C1166376,C1166598,C1166961,C1166951,C1166950,C1166953,C1166952,C1166366,C1166594,C1166597,C1166596,C1166605,C1166604,C1166607,C1166606,C1166601,C1166600,C1166603,C1166602,C1166627,C1166608,C1166805,C1166804,C1166599,C1166368,C1166369,C1166629,C1166958,C1166362,C1166363,C1166628,C1166418,C1166367,C1166364,C1166365,C1166784,C1166785,C1166786,C1166787,C1166957,C1166782,C1166783,C1166959,C1166788,C1166789,C1166963,C1166954,C1166595,C1166972,C1166955,C1166960,C1166816,C1166962,C1166794,C1166616,C1166617,C1166982,C1166983,C1166949,C1166815,C1166419,C1166817
chr7	77325213	77326662	chr7	77313168	77314643	CLUSTER8	3	-	-	uc003ugj.1:0-1449	uc003ugk.3:0-525	BC037783	AF290475	Overlapping_Complex	0	3	0	2	1.0	1.0		C1613298
chr19	40477073	40477145	chr6	74225475	74227657	CLUSTER9	2	+	-	uc002omq.2:0-72,uc002omr.2:0-72	uc003phg.2:1059-3241	PSMC4	EEF1A2	Interchromosomal	None	2	0	2	0.0384615384615	0.0229885057471		C0979002,C0979044
chr15	68521840	68522080	chr15	68483044	68489966	CLUSTER10	2	-	-	uc010ujy.1:0-240,uc002arf.2:0-240	uc002ard.2:1007-4602,uc002arc.2:897-4492,uc002arb.2:1038-4633,uc002are.2:866-4461	CLN6	DKFZp686A09136,CALML4	Read_Through	-882	2	0	2	0.2	1.0		C2276053,C2276051,C2276047,C0654555,C0654557,C0654551,C0654553,C2276049
chr20	35973088	36033819	chr8	11679259	11696817	CLUSTER12	2	+	+	uc002xgy.2:0-3995,uc002xgx.2:0-4096	uc011kxj.1:657-2228,uc010lsb.2:789-2360,uc010lsa.1:435-1085,uc011kxk.1:531-2102,uc003wui.2:533-2104,uc003wuj.2:443-2014,uc003wuk.2:582-2153,uc011kxi.1:479-1884,uc011kxh.1:384-1955,uc003wuh.2:721-2292,uc011kxe.1:730-2301	SRC	FDFT1	Interchromosomal	None	2	0	2	1.0	0.046511627907		C1137908,C1137909,C1137904,C1137905,C1137907,C1137902,C1137903,C1137889,C1137888,C1137884,C1137887,C1137886,C1137881,C1137883,C1137882,C1137913,C1137912,C1137911,C1137910,C1137892,C1137890,C1137891
chr19	18654296	18654383	chr17	57970443	58027784	CLUSTER14	2	-	+	uc002njk.1:0-87,uc002njj.1:0-87	uc002ixy.2:0-5315,uc010won.1:0-5246,uc010ddj.1:0-2042,uc010wom.1:0-5444	FKBP8	RPS6KB1	Interchromosomal	None	2	0	2	0.03125	1.0		C0969762,C0969731,C0969625,C0969630,C0969599,C0969757,C0969629,C0969761
chr20	57464180	57470745	chr5	134669448	134680370	CLUSTER17	2	+	+	uc010gjr.2:0-307	uc003laj.1:461-2473	GNAS	AK026965	Interchromosomal	None	2	0	2	0.0129032258065	1.0		C2075559
chr11	1775224	1785222	chr11	1756060	1769349	CLUSTER20	2	-	-	uc001luc.1:0-1104,uc009yda.1:0-1101	uc001lub.1:334-1386	CTSD	CR626060	Read_Through	-2174	2	0	2	0.013698630137	0.4		C1919157,C0273730
chr1	155278539	155278756	chr15	43432319	43433465	CLUSTER22	2	+	-	uc001fkd.2:0-217	uc001zqs.1:0-1146	FDPS	CR599671	Interchromosomal	None	2	0	2	0.0555555555556	1.0		C0152225
chr14	73525221	73566458	chr20	46286151	46305367	CLUSTER28	2	+	-	uc001xnn.3:0-1074,uc001xnp.2:0-928,uc001xno.2:0-1074,uc010ttu.1:0-1142	uc002xtq.2:1919-4236,uc002xtr.2:1919-4227,uc002xto.2:1580-3897	RBM25	SULF2	Interchromosomal	None	2	0	2	1.0	0.0166666666667		C0609933,C2267921,C2267920,C0609934,C0609945,C0609944,C0609932,C0609946,C0609963,C0609962,C2267919,C0609964
chr9	102861511	103035358	chr18	47349156	47404252	CLUSTER30	2	+	-	uc004bao.1:0-1995,uc011lve.1:0-2080,uc004bap.1:0-1995,uc010mtb.1:0-2006,uc010mta.1:0-2199,uc004bar.1:0-2083,uc004baq.1:0-2268	uc002leb.2:3564-9519,uc002lea.2:705-6582	INVS	MYO5B	Interchromosomal	None	2	0	2	1.0	0.111111111111		C1720410,C2705064,C2140890,C1720403,C1720407,C1720406,C1720405,C1720404,C1720409,C1720408,C2705063,C2140892,C2140891,C2140889
chr9	140098537	140100090	chr9	140086069	140087143	CLUSTER35	2	-	-	uc004clv.2:0-1553	uc004clu.2:1542-2447,uc004clt.2:1542-2531	TMEM203	C9orf75	Read_Through	-3556	2	0	2	1.0	0.08		C1769431,C1769432
chr3	46919236	46925124	chr10	133753535	133770051	CLUSTER39	2	+	+	uc003cqn.2:0-407,uc003cqm.2:0-277	uc001lks.2:100-1847,uc009yay.2:0-1894,uc001lkt.2:100-1720,uc001lkr.2:213-1833	PTH1R	PPP2R2D	Interchromosomal	None	2	0	2	1.0	0.142857142857		C1279609,C1279619,C1279613,C1279612,C1279611,C1279610,C1279615,C1279614
chr7	130295824	130353598	chr3	128976570	128996614	CLUSTER42	2	-	+	uc003vqh.1:0-824,uc003vqh.1:0-825	uc010htb.2:1018-3252,uc003els.2:837-3071	COPG2	COPG	Interchromosomal	None	2	0	2	0.666666666667	0.0454545454545		C1629506,C1629507,C1629504,C1629505
chr7	64126511	64139714	chr7	64144465	64147263	CLUSTER48	2	+	+	uc003tte.2:0-312,uc003ttd.2:0-454	uc003ttf.2:90-2759	ZNF107	BC053669	Overlapping_Same	0	2	0	2	1.0	1.0		C1607023,C1607014
chr15	22892684	22928510	chr5	156723681	156822604	CLUSTER49	2	+	+	uc001yus.2:0-490,uc010aya.1:0-600,uc001yut.2:0-609	uc003lwt.2:0-6147,uc011ddp.1:0-5664	CYFIP1	CYFIP2	Interchromosomal	None	2	0	2	0.0606060606061	1.0		C0632155,C0632208,C1998072,C1998089,C0632132,C0632185
chr19	10946685	10946983	chr16	31202063	31203097	CLUSTER52	2	-	+	uc002mpy.2:0-298	uc002ebh.2:1372-1998,uc002ebg.2:1340-1966,uc002ebj.2:1343-1969,uc002ebi.2:1378-2004,uc002ebf.2:1375-2001	TMED1	FUS/CHOP,FUS	Interchromosomal	None	2	0	2	0.25	0.018691588785		C0961223,C0961222,C0961221,C0961220,C0961224
