#chrom5p	start5p	end5p	chrom3p	start3p	end3p	chimera_cluster_id	score	strand5p	strand3p	transcript_ids_5p	transcript_ids_3p	genes5p	genes3p	type	distance	total_frags	spanning_frags	unique_alignment_positions	isoform_fraction_5p	isoform_fraction_3p	breakpoint_spanning_reads	chimera_ids
chr19	571325	580782	chr19	13135835	13209609	CLUSTER21	37	+	+	uc010drr.2:0-541,uc002lpb.2:0-541,uc002loy.2:0-474,uc002loz.2:0-889,uc002lpc.2:0-1026,uc002lpa.2:0-541	uc010xmx.1:104-5731,uc002mwe.2:63-5542,uc002mwf.2:101-5457	hEMMPRIN,BSG	NFIX	Intrachromosomal	12551293	37	16	36	0.268115942029	0.948717948718	>6557021/1;pos=84;strand=-,CAAGGATGAGTTCCACCCGTTCATCTAGGCACTGCTGCCTCACGTCCGCG,>1664365/2;pos=62;strand=-,ACAAGATCACTGACTCTGAGGACAAGGATGAGTTCCACCCGTTCATCGAG,>1819054/2;pos=63;strand=-,CAAGATCACTGACTCTGAGGACAAGGATGAGTTCCACCCGTTCATCGAGG,>1893284/2;pos=68;strand=-,TCACTGACTCTGAGGACAAGGATGAGTTCCACCCGTTCGTCGAGGCACTC,>6100997/1;pos=83;strand=-,ACAAGGATGAGTTCCACCCGTTCATCGAGGCACTGCTGCCTCACGTCCGC,>3365764/1;pos=84;strand=-,CAAGGATGAGTTCCACCCGTTCATCGAGGCACTGCTGCCTCACGTCCGCG,>4924377/1;pos=438;strand=+,CTGGGCCTGGTACAAGATCACTGACTCTGAGGACAAGGATGAGTTCCACC,>2079079/2;pos=447;strand=+,GTACAAGATCACTGACTCTGAGGACAAGGATGAGTTCCACCCGTTCATCG,>5999252/1;pos=448;strand=+,TACAAGATCACTGACTCTGAGGACAAGGATGAGTTCCACCCGTTCATCGA,>3633656/2;pos=451;strand=+,TAGATCACTGACTCTGAGGACAAGGATGAGTTCCACCCGTTCATCGAGGC,>4496264/1;pos=453;strand=+,TATCACTGACTCTGAGGACAAGGATGAGTTCCACCCGTTCATCGAGGCAC,>113423/2;pos=453;strand=+,GATCACTGACTCTGAGGACAAGGATGAGTTCCACCCGTTCATCGAGGCAC	C1031953,C2360649,C1032301,C2360553,C1031859,C1032099,C1031856,C1032446,C1032153,C1032004,C1032151,C1032006,C1032443,C2360555,C1032299,C1032540,C1032397,C1032249
chr9	139438476	139440238	chr9	134062676	134109090	CLUSTER12	8	-	+	uc004chz.2:0-139	uc004cag.2:3530-6599,uc004cai.2:2128-5197,uc010mzf.2:2030-2694,uc010mzg.2:0-3232,uc004cah.2:3500-6569	NOTCH1	NUP214,KIAA0023	Intrachromosomal_Converging	-5279806	8	5	8	0.888888888889	0.285714285714	>2159387/1;pos=100;strand=+,GCGGGAAGTGTGAAGCGGCCAATGGCACGGAGGCCTGCGTTTCTTCAGTG,>4968654/2;pos=101;strand=+,CGGGAAGTGTGAAGCGGCCAATGGCACGGAGGCATGCGTTTCTTCAGTGC,>1088169/1;pos=113;strand=+,AGCGGCCAATGGCACGGAGGCCTGCGTTTCTTCAGTGCCCTACTCCACAG,>5738313/1;pos=3546;strand=-,GGCCTGCGTTTCTTCAGTGCCCTACTCCACAGCCAAAACACCTCACCCAG,>678125/2;pos=3545;strand=-,AGGCCTGCGTTTCTTCAGTGCCCTACTCCACAGCCAAAACACCTCACCCG	C2083161,C2083159,C2083166,C2083164,C2083157
chr11	1775033	1785222	chr11	1756060	1769349	CLUSTER13	9	-	-	uc009yda.1:0-1200,uc001luc.1:0-1203	uc001lub.1:334-1386	CTSD	CR626060	Read_Through	-2174	9	3	8	0.0272727272727	1.0	>2835159/2;pos=1167;strand=+,AGGCTACAAGCTGTCCCCAGAGGACTACACGCTCAAGGCCCAGGGCCCCG,>3947257/2;pos=1167;strand=+,AGGCTACAAGCTGTCCCCAGAGGACTACAAGCTCAAGGCCCAGGGCCCCG	C2227491,C0275405
chr13	32420920	32520318	chr13	32652971	32870775	CLUSTER9	8	+	+	uc010tdv.1:0-329	uc001utx.2:566-10715,uc010tdw.1:566-10713	EEF1DP3	FRY	Read_Through	71716	8	4	7	1.0	0.8	>1822787/2;pos=287;strand=+,ATTCACCTGAGGCACCCGAAGAAGAGACCATCCATATTTCCAGCTTCTCC,>3747382/2;pos=288;strand=+,TTCACCTGAGGCACCCGAAGAAGAGACCATCCATATTTCCAGCTTCTCCC,>1080106/2;pos=304;strand=+,GAAGAAGAGACCATCCATATTTCCAGCTTCTCCCGTTGGCAACGGTTACA,>1017846/2;pos=308;strand=+,AAGAGACCATCCATATTTCCAGCTTCTCCCGTTGGCAACGGTTACATCAA	C2647648,C2647649
chr12	80211174	80328978	chr2	110300378	110343415	CLUSTER19	6	-	-	uc001szb.2:0-1361,uc001syz.2:0-1505,uc010suc.1:0-1116,uc010sud.1:0-1361,uc001sza.2:0-1258,uc001szc.2:0-1505	uc002tex.2:409-3182	PPP1R12A	SEPT10	Interchromosomal	None	6	4	6	0.666666666667	0.6	>746226/1;pos=421;strand=-,ACCTATTAAAAAGAAAAGAGAAAACATTCGTTCGTTGACTATGTCTGGCC,>4688831/2;pos=420;strand=-,CACCTATTAAAAAGAAAAGAGAAAACATTCGTTCGTTGACTATGTCGGGC,>4380771/1;pos=420;strand=-,CACCTATTAAAAAGAAAAGAGAAAACATTCGTTCGTTGACTATGTCTGGC,>3353151/1;pos=1469;strand=+,ATCAGGTCAAGCAACACCTACATCACCTATTAAAAAGAAAAGAGAAAACA	C0505975,C0505933,C0505954,C0505996,C2630043,C2630022
chr3	158449929	158450275	chr3	183819273	183824782	CLUSTER23	5	-	+	uc003fcj.2:0-346,uc003fci.2:0-346	uc003fmm.2:473-1910,uc010hxq.2:700-2137	RARRES1	HTR3E	Intrachromsomal_Diverging	25367691	5	0	5	0.0187969924812	1.0		C1475778,C1474890,C1475856,C1475002
chr9	140513444	140513501	chr9	135073353	135118220	CLUSTER4	4	+	+	uc004coa.2:0-57,uc011mfc.1:0-57,uc004cob.1:0-57	uc004cbh.2:989-3090	EHMT1	NTNG2	Intrachromosomal_Complex	-5395223	4	4	4	0.2	1.0	>2045384/1;pos=20;strand=+,CGCTGCGGGCCCGGGCCATGGCCGCCGCCGATGCCGAGGAGAATCCCTAC,>6452049/1;pos=21;strand=+,GCTGCGGGCCCGGGCCATGGCCGCCGCCGATGCCGAGGAGAATCCCTACC,>1999546/1;pos=25;strand=+,CGGGCCCGGGCCATGGCCGCCGCCGATGCCGAGGAGAATCCCTACCTATG,>704683/2;pos=31;strand=+,CGGGCCATGGCCGCCGCCGATGCCGAGGAGAATCCCTACCTATGCAGCAA	C3089013,C2100877,C2100869
chr17	37856254	37856564	chr17	61509666	61515531	CLUSTER6	4	+	-	uc010wek.1:0-310,uc002hso.2:0-310,uc010cwb.2:0-310,uc002hsp.2:0-310,uc002hsn.1:0-310	uc002jaq.2:0-3013	ERBB2,HER-2	CYB561	Intrachromosomal_Converging	23641082	4	0	4	0.0151515151515	1.0		C2341383,C2749895,C0902488,C0887562,C0892113
chr9	131133598	131140385	chr13	26343184	26595419	CLUSTER0	3	+	+	uc004buv.2:0-167,uc011may.1:0-167	uc010tdi.1:2344-4747,uc010aaj.1:1255-2226,uc010tdj.1:2489-4967,uc001uqk.2:2526-5004	URM1	ATP8A2,DKFZp434B1913	Interchromosomal	None	3	0	3	0.09375	0.75		C3070603,C2043921,C3070605,C3070595,C2043918,C2043920,C2043910,C3070606
chr4	164087515	164088073	chr14	103800493	103811359	CLUSTER16	3	-	+	uc010iqw.1:0-558,uc003iqj.2:0-558,uc003iqk.2:0-558	uc001ymr.2:0-5578	NAF1	EIF5	Interchromosomal	None	3	0	3	1.0	1.0		C1606421,C2448227,C1606458
chr9	97136833	97200810	chr9	97101118	97123230	CLUSTER11	2	+	+	uc004aur.2:0-663,uc011luh.1:0-286	uc004auq.1:513-2161	HIATL1	AK095188	Adjacent_Complex	-13602	2	2	2	0.2	1.0	>3193206/2;pos=619;strand=+,ATTCTTTACCTGCTTCCCAATCCCACTGATGAGGATCAGCCCATGAAGTT,>3397376/1;pos=642;strand=+,CACTGATGAGGATCAGCCCATGAAGTTTTCATGGGCTGAGCTGCTGAGTT	C3068146,C2030601
chr20	31172372	31172875	chr20	31052584	31115716	CLUSTER15	2	-	-	uc002wxx.2:0-503	uc002wxw.1:1167-2040	LOC284804	C20orf112	Read_Through	-12109	2	2	2	1.0	1.0	>3947974/1;pos=1184;strand=-,CGGGCTCGGGGGCAGATGGCCTGTCGGAGCCAGAGGGCATCTCTCTGAAG,>4064071/1;pos=463;strand=+,AGATGGGCCAAGTGGTGTATGTGCCGGTCAAGACGGGCTCGGGGGCAGAT	C1264352
chr9	99711837	99775862	chr9	97101118	97123230	CLUSTER24	2	-	+	uc004aws.2:0-608	uc004auq.1:513-2161	HIATL2	AK095188	Intrachromosomal_Converging	-2585098	2	2	2	1.0	1.0	>3193206/2;pos=564;strand=+,ATTCTTTACCTGCTTCCCAATCCCACTGATGAGGATCAGCCCATGAAGTT,>3397376/1;pos=587;strand=+,CACTGATGAGGATCAGCCCATGAAGTTTTCATGGGCTGAGCTGCTGAGTT	C2030658
chr4	76649460	76649795	chr4	76567955	76587233	CLUSTER25	2	-	-	uc010iiy.2:0-335	uc003hir.2:141-4272,uc003his.2:276-4407,uc003hit.2:276-4308	AK311578	G3BP2	Read_Through	-50354	2	2	2	1.0	0.5	>153580/1;pos=159;strand=-,GTGACAGCATTTGACATTGTGCAGCAAAGAAATGGTTATGGAGAAGCCCA,>1553304/2;pos=303;strand=+,GAAAGTGAAATTTTCCTTTGGCCAACGTGACAGCATTTGACATTGTGCAG	C2445143,C2445142,C2445144
chr14	105941131	105945830	chr14	105954503	105955122	CLUSTER7	2	+	+	uc001yrd.1:0-627,uc001yrg.2:0-871,uc001yrf.1:0-1399,uc010tyr.1:0-1006,uc001yrh.1:0-234	uc001yri.3:154-475	CRIP2	CRIP1	Read_Through	6756	2	1	2	0.0298507462687	1.0	>803183/1;pos=595;strand=+,AGCCCTGCTATGGAATCCTCTTCGGACCCAAGGCCGAGAGGGTGACCTCT	C2669975,C0684780,C0684755,C0684702,C0684806
chr9	123719563	123812554	chr9	89771488	89774641	CLUSTER14	2	-	+	uc004bkv.2:0-4791	uc004apa.1:255-3408	C5	C9orf170	Intrachromosomal_Converging	-33939974	2	1	2	1.0	1.0	>3394054/1;pos=4761;strand=+,AAGGCAACCCTTCTGGATATCTACAAAACTGGTTCTGTTTCTCCGGAAAA	C2037044
chr17	79980702	79980773	chr17	80015752	80022945	CLUSTER20	2	-	-	uc002kdd.2:0-71,uc002kdc.2:0-71	uc002kds.2:192-1863,uc002kdt.2:192-1855,uc002kdr.2:192-1862,uc010wvi.1:0-800	STRA13	DUS1L	Intrachromosomal_Complex	34978	2	1	2	0.0512820512821	0.142857142857	>2078275/2;pos=35;strand=+,CATGGAGGGAGCAGGAGCTGGATCCGGCTTCCGGAAGCCTGGAGACGATG	C0994902,C0994903,C0994901,C0994905,C0994892,C0994893,C0994894,C0994896
chr16	81118068	81129980	chr16	81087103	81087699	CLUSTER26	2	-	-	uc002fge.2:0-456,uc002fgd.2:0-520	uc010chf.2:1313-1909	GCSH	C16orf46	Read_Through	-5058	2	1	2	0.4	0.666666666667	>2223737/2;pos=490;strand=+,GGACTTGTAAACAAATCTTGTTATGAAGATGCACAGGAAAAAGAAGATAA	C0811018,C0811020
chr19	39806722	39811489	chr19	39797457	39805976	CLUSTER1	2	-	-	uc010egm.1:0-144	uc002okw.2:0-3131	BC110060	LRFN1	Read_Through	-18	2	0	2	1.0	1.0		C2371916
chrM	237	368	chrM	12338	14645	CLUSTER2	2	-	+	uc004coq.3:0-131	uc004cox.3:0-2307	DQ582201	MTND5	Intrachromsomal_Diverging	11969	2	0	2	1.0	1.0		C2101279
chr1	32479491	32497241	chr2	225629807	225643001	CLUSTER3	2	+	-	uc001bub.2:0-729,uc001bub.2:0-876,uc001buc.1:0-729,uc001buc.1:0-876	uc010fwz.1:5894-7430,uc002vob.2:5748-7284,uc002voa.2:1814-3426,uc002vob.2:5895-7284,uc010fwz.1:6041-7430,uc002voa.2:1961-3426	KHDRBS1	DOCK10,Nbla10300	Interchromosomal	None	2	0	2	0.0277777777778	1.0		C0064290,C0063913,C0063914,C0063959,C0064289,C0063598,C0063599,C0063596,C0063597,C0063961,C0063960,C0063962
chr17	37856254	37856564	chrX	133903597	133930385	CLUSTER5	2	+	-	uc010wek.1:0-310	uc004exv.2:112-2700,uc004exq.2:0-3522,uc004exr.2:0-3465	ERBB2	FAM122B	Interchromosomal	None	2	0	2	0.2	1.0		C2753659,C2753663,C2753660
chr12	6457893	6473313	chr12	6437924	6443422	CLUSTER8	2	-	-	uc001qnx.2:0-1841,uc001qnw.2:0-1993,uc010sfb.1:0-1712,uc010sfb.1:0-1788,uc001qnv.2:0-1556,uc001qnx.2:0-1917,uc001qnv.2:0-1632,uc001qnw.2:0-2069	uc001qnt.2:0-1894	SCNN1A	TNFRSF1A	Read_Through	-12588	2	0	2	0.08	1.0		C0411441,C0411439,C0411366,C0411365,C2614918,C2614916,C0412186,C0412184
chr12	42631957	42632050	chr3	72423751	72495774	CLUSTER10	2	-	-	uc010skp.1:0-93	uc003dpe.2:0-4441	YAF2	RYBP	Interchromosomal	None	2	0	2	1.0	1.0		C2617186
chr7	76139745	76157197	chr7	102178366	102182109	CLUSTER17	2	+	-	uc003ufq.2:0-1606,uc003ufo.2:0-1521	uc010lid.1:546-1723,uc011klb.1:162-6366,uc003vai.2:361-1540,uc011kku.1:546-4074,uc011kkw.1:502-1679,uc003vah.2:536-1715,uc010lij.1:162-1341,uc003uzw.2:327-1504	UPK3B	RASA4,POLR2J3,POLR2J2,UPLP	Intrachromosomal_Converging	26021168	2	0	2	1.0	0.142857142857		C1857630,C1857625,C1857626,C1857634,C1857758,C1857629,C1857627,C1857635,C1857769,C1857768,C1857759,C1857760,C1857763,C1857762,C1857767,C1857636
chr9	123719563	123812554	chr9	96289437	96293687	CLUSTER18	2	-	+	uc004bkv.2:0-4791	uc004atv.2:1443-3583,uc004atz.2:385-3894,uc010mrf.1:371-686,uc004aty.2:941-4453,uc004atw.2:1443-4955,uc004atx.2:944-1692	C5	FAM120A,C9orf10	Intrachromosomal_Converging	-27420928	2	0	2	1.0	0.0384615384615		C2037049,C2037048,C2037045,C2037047,C2037046,C2037053
chr7	76139745	76157197	chr7	43980494	44027846	CLUSTER22	2	+	-	uc003ufq.2:0-1606,uc003ufo.2:0-1521	uc003tjc.2:444-6465,uc010kxw.2:266-1023	UPK3B	POLR2J4	Intrachromsomal_Diverging	-32080996	2	0	2	1.0	0.222222222222		C1857628,C1857761,C1857624,C1857757
