#chrom5p	start5p	end5p	chrom3p	start3p	end3p	chimera_cluster_id	score	strand5p	strand3p	transcript_ids_5p	transcript_ids_3p	genes5p	genes3p	type	distance	total_frags	spanning_frags	unique_alignment_positions	isoform_fraction_5p	isoform_fraction_3p	breakpoint_spanning_reads	chimera_ids
chr1	147931724	147931980	chr1	145004781	145005286	CLUSTER0	14	-	+	uc009wjz.1:0-256,uc009wjy.1:0-256,uc001eql.2:0-256	uc001emi.3:0-505	FLJ39739	BC065231	Intrachromosomal_Converging	-2829840	14	0	13	1.0	1.0		C1094818,C1094820,C0045395
chr1	149576453	149576700	chr1	145004781	145005286	CLUSTER9	14	+	+	uc001esk.3:0-247,uc009wld.2:0-247,uc009wlb.1:0-539,uc001esl.3:0-247	uc001emi.3:0-505	BC110832,LOC728855	BC065231	Intrachromosomal_Complex	-4571166	14	0	13	0.56	1.0		C0045627,C1095168,C1095163,C0045629
chr1	144340526	144340773	chr1	145004781	145005286	CLUSTER11	14	-	+	uc001ekr.3:0-247,uc001ekt.3:0-247	uc001emi.3:0-505	LOC728855	BC065231	Intrachromsomal_Diverging	664007	14	0	13	0.56	1.0		C0041322,C0041325
chr1	143744201	143744587	chr1	145004781	145005286	CLUSTER14	14	-	+	uc001ejr.3:0-386,uc001ejp.3:0-386,uc009why.2:0-386	uc001emi.3:0-505	FLJ39739	BC065231	Intrachromsomal_Diverging	1260193	14	0	13	1.0	1.0		C0041316,C1094793,C0041318
chr3	186959269	187009752	chr12	7187517	7189411	CLUSTER24	4	-	-	uc003frh.1:0-1634,uc003frj.2:0-1402,uc003fri.2:0-1559,uc003fri.2:0-1634,uc003frj.2:0-1327,uc003frh.1:0-1559	uc010sfy.1:1173-2261,uc010sfy.1:1097-2261	MASP1	C1R	Interchromosomal	None	4	0	4	1.0	0.222222222222		C0746828,C0746829,C0746824,C0746825,C0746826,C0746827,C0746832,C0746831,C0746830
chr20	19780218	19780391	chr20	19870210	19983100	CLUSTER18	3	+	+	uc002wrm.1:0-173	uc010gcu.1:0-2944,uc002wro.1:0-4243	BC090059	RIN2	Read_Through	79272	3	1	3	1.0	1.0	>4931813/1;pos=140;strand=+,AGTGGGAGAGGAGAAGAGATGCTGGCGTGAAGGGGAGTCCCCGGCGTGCAGTGGAG	C0574173,C0574172
chr6	5004050	5021707	chr6	5042740	5043171	CLUSTER20	3	+	+	uc003mwn.1:0-236	uc011dhz.1:224-655	AK094934	BC133670	Overlapping_Same	0	3	1	3	1.0	1.0	>92442/1;pos=47;strand=+,AGATTAAAGGCTACCCATGGGGACCTCAACAGCTTTGCCATTGCACACTATCTTTG	C0812138
chr6	36098262	36098478	chr14	35522484	35552587	CLUSTER12	3	+	+	uc003olt.2:0-216,uc003ols.2:0-216	uc001wsp.2:555-3253,uc001wsq.2:225-2923	MAPK13	FAM177A1	Interchromosomal	None	3	0	3	0.428571428571	0.157894736842		C0826458,C0826459,C0826457,C0826460
chrUn_gl000211	82661	82792	chr1	142803531	142826641	CLUSTER13	3	+	+	uc003boa.2:0-131	uc001ejc.2:0-1093	LOC642204	BC071797	Interchromosomal	None	3	0	3	1.0	1.0		C0690855
chr9	67281702	67281904	chr9	33384951	33387090	CLUSTER23	3	-	-	uc004aem.1:0-202,uc004aeo.1:0-489	uc003zsu.1:198-1075	AQP7P1,BC071803	bA251O17.3	Intrachromosomal	-33851749	3	0	3	0.5	0.75		C0979124,C0979110
chr18	10797372	10890690	chr18	10794068	10795002	CLUSTER32	3	-	-	uc002kow.1:0-1410	uc002kov.1:0-934	C18orf58	AX747416	Read_Through	-2369	3	0	3	1.0	1.0		C0394596
chr7	27191907	27192217	chr7	27180996	27181704	CLUSTER3	2	-	-	uc003syq.1:0-310	uc003syn.1:623-1331	DQ655986	HOXA5	Read_Through	-3697	2	2	2	1.0	0.333333333333	>4374338/1;pos=288;strand=+,CTTCTGGGAGCCACCGTCTGAAGACAACATAGGCGGCCCGGAAGGCAAAAGGGCCC	C0877307
chr16	87367492	87394561	chr16	87336423	87349429	CLUSTER22	2	-	-	uc010vot.1:0-1188,uc002fjw.2:0-1440,uc002fjv.2:0-1645	uc002fju.2:270-893	FBXO31	FBXO31	Read_Through	-11977	2	2	2	0.153846153846	0.666666666667	>6525072/2;pos=280;strand=-,CCCCCGAACCTGCAGGATGTGGAATAGCACATTTCAAACCTACAAGAAAGAAGTGT,>1803370/2;pos=276;strand=-,ACTACCCCCGAACCTGCAGGATGTGGAATAGCACATTTCAAACCTACAAGAAAGAA	C0331557,C0331604,C1363571
chr1	143915748	143916308	chr1	206557369	206628046	CLUSTER38	2	+	+	uc010oxm.1:0-560	uc010prv.1:0-2493	RP3-365I19.1-001	SRGAP2	Intrachromosomal	62462891	2	2	2	0.0952380952381	1.0	>4538139/2;pos=516;strand=+,AAAAGGATAAGGAGATCATAGCAGAGTACGATACTCAGGTCAAAGAGTAAAGAAGT,>3796896/2;pos=526;strand=+,GGAGATCATAGCAGAGTACGATACTCAGGTCAAAGAGTAAAGAAGTCGGCCAGCAG	C1231031
chr7	74925018	74925201	chr7	102230606	102343928	CLUSTER2	2	-	-	uc003uco.1:0-183,uc011kfq.1:0-555,uc011kfq.1:0-1069,uc003uci.1:0-183,uc011kfr.1:0-270,uc003ucl.1:0-513,uc011kfp.1:0-437,uc010lcy.1:0-713,uc011kft.1:0-270,uc003uct.1:0-545,uc011kfu.1:0-513,uc011kfv.1:0-270,uc003uch.1:0-745,uc003uco.1:0-796,uc003ubz.1:0-183,uc003ucq.2:0-442,uc003ubz.1:0-796,uc003ucd.2:0-410,uc003uci.1:0-796,uc003ucm.2:0-410,uc003uca.3:0-270	uc011kld.1:94-1143	PMS2L14,PMS2L12,LOC389527	KIAA0538	Intrachromosomal_Complex	27305404	2	1	2	0.25	0.666666666667	>4647794/2;pos=151;strand=+,CGCCATAAGGAATTTCAAAGGAATATTAAGAAGAATCGTGAAAAATGGAAGACAGT	C1594928,C0893127,C1186692,C0893183,C0893104,C0893105,C0893114,C1594954,C0893109,C1594922,C1594968,C0893162,C0893163,C0893149,C1594929,C1594972,C0893168,C0893154,C0893135,C0893134,C1594933
chr7	74306894	74313951	chr7	102230606	102343928	CLUSTER4	2	+	-	uc003ubk.2:0-482,uc003ubl.2:0-585,uc003ubm.3:0-395,uc010lbw.2:0-477	uc011kld.1:94-1143	PMS2L5,LOC401379	KIAA0538	Intrachromosomal_Converging	27908275	2	1	2	0.285714285714	0.666666666667	>4647794/2;pos=450;strand=+,CGCCATAAGGAATTTCAAAGGAATATTAAGAAGAATCGTGAAAAATGGAAGACAGT	C1186654,C0892472,C0892479,C0892476
chr7	72476666	72483806	chr7	76796975	76870542	CLUSTER6	2	+	+	uc003txh.3:0-557,uc003txf.3:0-444,uc010las.1:0-713,uc003txn.3:0-437,uc003txi.3:0-779,uc003txg.3:0-545,uc003txh.3:0-1071,uc011kep.1:0-270	uc003uga.2:116-3330,uc003ufz.1:116-4561	PMS2L15,LOC389527	CCDC146	Intrachromosomal	4239916	2	1	2	0.285714285714	0.666666666667	>4647794/2;pos=412;strand=+,CGCCATAAGGAATTTCAAAGGAATATTAAGAAGAATCGTGAAAAATGGAAGACAGT	C0882797,C0882819,C0882822,C0882792,C0882790,C0882810,C0882811,C0882812,C0882813,C0882799,C0882817,C1184439,C1594344,C1594346,C0882821,C1184441
chr6	155153831	155154543	chr6	155228864	155230000	CLUSTER10	2	+	+	uc003qqb.2:0-712,uc003qqb.2:0-973	uc003qqc.1:371-1507	TIAM2	AK124484	Overlapping_Same	0	2	1	2	0.666666666667	0.666666666667	>2491682/1;pos=372;strand=-,AACTGAGGGGACATAATCATCACTCAGTAGGCAAGATGATGATGAATGAAGNCCTG	C0872277,C0872276
chr20	42846122	42846322	chr20	42853461	42854666	CLUSTER15	2	+	+	uc002xlo.2:0-200	uc002xlm.2:275-1480,uc002xll.2:191-1396,uc002xln.2:522-1727	BC036500	BC019858,CR623134,BC032458	Overlapping_Complex	0	2	1	2	1.0	0.666666666667	>2179355/1;pos=172;strand=+,AAAGCTGCAGAAGAAAGAATCTCCATGTGATGAGCCCCAGAGAGGCGAAGCCACTT	C0580244,C0580245,C0580246
chr7	74306894	74313951	chr7	76796975	76870542	CLUSTER16	2	+	+	uc003ubk.2:0-482,uc003ubl.2:0-585,uc003ubm.3:0-395,uc010lbw.2:0-477	uc003uga.2:116-3330,uc003ufz.1:116-4561	PMS2L5,LOC401379	CCDC146	Intrachromosomal	2429603	2	1	2	0.285714285714	0.666666666667	>4647794/2;pos=450;strand=+,CGCCATAAGGAATTTCAAAGGAATATTAAGAAGAATCGTGAAAAATGGAAGACAGT	C0892469,C0892478,C0892473,C0892470,C0892477,C0892475,C1186652,C1186653
chr7	72476666	72483806	chr7	102230606	102343928	CLUSTER19	2	+	-	uc003txh.3:0-557,uc003txf.3:0-444,uc010las.1:0-713,uc003txn.3:0-437,uc003txi.3:0-779,uc003txg.3:0-545,uc003txh.3:0-1071,uc011kep.1:0-270	uc011kld.1:94-1143	PMS2L15,LOC389527	KIAA0538	Intrachromosomal_Converging	29718588	2	1	2	0.285714285714	0.666666666667	>4647794/2;pos=412;strand=+,CGCCATAAGGAATTTCAAAGGAATATTAAGAAGAATCGTGAAAAATGGAAGACAGT	C0882820,C0882809,C0882794,C0882815,C0882816,C1594347,C0882823,C1184442
chr11	6470536	6495205	chr11	6452268	6461960	CLUSTER27	2	-	-	uc001mdi.2:0-2303,uc009yfd.2:0-2476,uc001mdh.2:0-2468,uc010raj.1:0-2130,uc010rak.1:0-2269	uc010rai.1:144-952,uc001mdg.2:144-1622,uc009yfc.2:144-1602	TRIM3	HPX	Read_Through	-7589	2	1	2	0.333333333333	1.0	>4472973/1;pos=170;strand=-,TCCAGGACTAGTGCCCATGGGAAGGTTGCTGAAGGCGAGACCAAGCCAGACCCAGA	C0128703,C0128702,C0128701,C0128700,C1106847,C0128704,C1106849,C1106848,C1253338,C1253334,C1253335,C1253336,C1253337,C0128699,C1253333
chr7	76610139	76645172	chr7	76796975	76870542	CLUSTER28	2	+	+	uc003ufw.3:0-1505,uc003ufy.2:0-880,uc011kgn.1:0-1504	uc003uga.2:116-3330,uc003ufz.1:116-4561	LOC100132832,PMS2L11	CCDC146	Intrachromosomal	98859	2	1	2	0.333333333333	0.666666666667	>4647794/2;pos=1473;strand=+,CGCCATAAGGAATTTCAAAGGAATATTAAGAAGAATCGTGAAAAATGGAAGACAGT	C1595926,C1595925,C0895510,C0895504,C0895505,C0895508
chr7	74710753	74925201	chr7	76796975	76870542	CLUSTER34	2	-	+	uc003uco.1:0-183,uc011kfq.1:0-555,uc011kfq.1:0-1069,uc003uci.1:0-183,uc011kfr.1:0-270,uc003ucl.1:0-513,uc011kfp.1:0-437,uc010lcy.1:0-713,uc011kft.1:0-270,uc003uct.1:0-545,uc011kfu.1:0-513,uc011kfv.1:0-270,uc003uch.1:0-745,uc003uco.1:0-796,uc003ubz.1:0-183,uc003ucq.2:0-442,uc003ubz.1:0-796,uc003ucd.2:0-410,uc003uci.1:0-796,uc003ucm.2:0-410,uc003uca.3:0-270	uc003uga.2:116-3330,uc003ufz.1:116-4561	PMS2L14,PMS2L12,LOC389527	CCDC146	Intrachromsomal_Diverging	1826732	2	1	2	0.666666666667	0.666666666667	>4647794/2;pos=764;strand=+,CGCCATAAGGAATTTCAAAGGAATATTAAGAAGAATCGTGAAAAATGGAAGACAGT	C0893173,C1594921,C1594920,C1594923,C1594925,C1594924,C1594927,C0893131,C0893166,C0893164,C0893130,C1594958,C0893100,C0893101,C0893124,C0893106,C0893108,C1186689,C0893128,C0893129,C0893126,C1594971,C1594930,C1186691,C1594969,C1594956,C1594951,C1594953,C0893139,C0893171,C0893159,C0893158,C0893157,C0893156,C0893152,C0893137,C0893150,C0893112,C0893110,C0893098,C0893099,C1594932
chr12	132589112	132599090	chr12	132472250	132475259	CLUSTER36	2	+	+	uc001ujw.1:0-1001	uc001ujl.2:2329-12263,uc001ujj.1:2221-2626,uc001ujn.2:2258-12192,uc001ujm.2:2258-11949,uc001ujk.2:2440-3093	EP400NL	EP400,KIAA1498	Intrachromosomal_Complex	-113852	2	1	2	1.0	0.285714285714	>1967131/2;pos=966;strand=+,AAGCATCTAAGAGGCAGTGAACACTGGCGCCCACAGGAGAACCAGGGGCATCAGCG	C0219104,C0219105,C0219101,C0219102,C0219103
chr7	76610139	76645172	chr7	102230606	102343928	CLUSTER37	2	+	-	uc003ufw.3:0-1505,uc003ufy.2:0-880,uc011kgn.1:0-1504	uc011kld.1:94-1143	LOC100132832,PMS2L11	KIAA0538	Intrachromosomal_Converging	25577531	2	1	2	0.333333333333	0.666666666667	>4647794/2;pos=1473;strand=+,CGCCATAAGGAATTTCAAAGGAATATTAAGAAGAATCGTGAAAAATGGAAGACAGT	C0895511,C0895507,C1595927
chr4	680321	682973	chr4	666226	667190	CLUSTER5	3	-	-	uc003gax.2:0-350,uc003gay.2:0-350,uc003gbb.1:0-189,uc003gba.2:0-350	uc003gas.2:177-358,uc003gar.2:315-496	MFSD7	ATP5I	Read_Through	-8008	3	0	2	1.0	0.75		C0748631,C0748630,C0748626,C0748627,C0748639,C0748638,C0748640,C0748641
chr7	142020709	142021362	chr7	142498725	142500250	CLUSTER1	2	+	+	uc011krq.1:0-526	uc003wbh.3:213-788	TCRBV5S1A1T	TCRBC2	Intrachromosomal	473004	2	0	2	1.0	0.666666666667		C1600918
chr11	117049939	117066631	chr11	117073718	117075507	CLUSTER7	2	+	+	uc001pqh.1:0-2476,uc001pqj.1:0-461,uc001pqi.1:0-2467	uc001pqo.2:193-1242,uc001pqn.2:506-1555	SIDT2	TAGLN	Read_Through	1878	2	0	2	0.133333333333	0.117647058824		C0175377,C0175368,C0175367,C0175358,C0175359,C0175376
chr15	40854971	40857252	chr7	26241324	26252974	CLUSTER8	2	-	+	uc001zmb.1:0-518,uc001zmc.1:0-333,uc001zly.2:0-518,uc010bbr.2:0-333,uc001zma.1:0-543	uc003sxu.2:0-1848,uc003sxv.2:0-1775	C15orf57	CBX3	Interchromosomal	None	2	0	2	0.2	1.0		C0270602,C0270603,C0270600,C0270601,C0270604,C0270598,C0270599,C0270605,C1127527,C1127528
chr7	142326376	142327044	chr7	142494046	142500250	CLUSTER17	2	+	+	uc003vzo.2:0-536	uc003wbf.3:0-648,uc003wbn.3:0-628,uc003wbe.3:0-628,uc011ksi.1:50-480	TCRBV17S1A1T	TCR_BV9,TCRVB	Intrachromosomal	167001	2	0	2	1.0	1.0		C0932638,C0932639,C0932649,C0932645
chr16	70024500	70099851	chr16	22535141	22547828	CLUSTER21	2	-	+	uc002eyc.2:0-1891	uc010bxg.2:302-3705,uc010vbw.1:196-2266,uc010vbv.1:399-3802,uc010bxi.2:123-3526	PDXDC2	LOC100132247,NPIPL3	Intrachromosomal_Converging	-47462381	2	0	2	0.5	0.181818181818		C0327903,C0327908,C0327907,C0327904
chr1	151150477	151162640	chr1	151142464	151142579	CLUSTER25	2	-	-	uc001exe.1:0-749	uc001exc.3:1205-1320,uc010pct.1:998-1113,uc001exb.2:510-625,uc001exd.2:1067-1182	VPS72	Sk-Tmod,TMOD4	Read_Through	-4100	2	0	2	0.0909090909091	1.0		C0046262,C0046259,C0046257,C0046255
chrM	8664	9990	chr5	134906373	134907558	CLUSTER26	2	+	-	uc011mfi.1:0-1326	uc003lay.2:785-1970	OK/SW-cl.16	CXCL14	Interchromosomal	None	2	0	2	1.0	0.0134228187919		C1616950
chr16	70024500	70099851	chr16	30234351	30246900	CLUSTER29	2	-	-	uc002eyc.2:0-1891	uc010vem.1:195-3490,uc010vel.1:158-3453	PDXDC2	NPIPL3	Intrachromosomal	-39753277	2	0	2	0.5	0.2		C0327911,C0327912
chr16	70024500	70099851	chr16	21415198	21426406	CLUSTER30	2	-	-	uc002eyc.2:0-1891	uc002dix.1:302-1604,uc010bws.2:237-2307,uc002diu.1:2443-4269,uc010vbg.1:123-1579	PDXDC2	LOC23117,NPIPL3	Intrachromosomal	-48538953	2	0	2	0.5	0.166666666667		C0327902,C0327886,C0327885,C0327905
chr2	61293363	61361411	chr2	61389977	61390367	CLUSTER31	2	+	+	uc002say.2:0-2544	uc010ypl.1:89-859,uc010ypm.1:116-886,uc002sba.2:362-656	KIAA1841	C2orf74	Read_Through	7074	2	0	2	1.0	0.4		C0509230,C0509229,C0509228
chr7	90032796	90034922	chr7	90095738	90419967	CLUSTER33	2	+	+	uc010leq.2:0-157,uc003ukr.2:0-157	uc003ukt.1:0-782	CLDN12	PFTK1	Read_Through	50471	2	0	2	0.5	1.0		C0897332,C1186766
chr17	7475602	7481234	chr17	7481273	7481409	CLUSTER35	2	+	+	uc002ghq.1:0-1553	uc010cml.1:0-136	EIF4A1	SNORA67	Overlapping_Same	0	2	0	2	0.0416666666667	1.0		C0346730
chr2	239756673	239757374	chr1	1246965	1247304	CLUSTER39	2	+	-	uc010zny.1:0-648,uc010znx.1:0-701	uc001aee.1:1795-2134,uc009vjy.1:2540-2879,uc001aeg.1:2170-2509,uc001aej.1:1358-1697,uc001aeh.1:1492-1831,uc001aei.1:1501-1840,uc010nyj.1:1902-2241,uc001aek.1:1578-1917,uc001aef.1:2268-2607,uc009vjz.1:1729-2068	TWIST2	CPSF3L	Interchromosomal	None	2	0	2	0.666666666667	0.0869565217391		C1467925,C1467913,C1467912,C1467905,C1467924,C1467917,C1467911,C1467915,C1467914,C1467892,C1467893,C1467894,C1467895,C1467896,C1467897,C1467898,C1467906,C1467909,C1467928,C1467916
chr16	70024500	70099851	chr16	29496996	29506928	CLUSTER40	2	-	-	uc002eyc.2:0-1891	uc010vdr.1:120-800	PDXDC2	NPIPL3	Intrachromosomal	-40493296	2	0	2	0.5	0.285714285714		C0327909
