#chrom5p	start5p	end5p	chrom3p	start3p	end3p	chimera_cluster_id	score	strand5p	strand3p	transcript_ids_5p	transcript_ids_3p	genes5p	genes3p	type	distance	total_frags	spanning_frags	unique_alignment_positions	isoform_fraction_5p	isoform_fraction_3p	breakpoint_spanning_reads	chimera_ids
chr17	35479453	35656692	chr17	37366790	37374426	CLUSTER76	40	-	-	uc010wdc.1:0-937,uc002hnn.2:0-7324,uc010cuy.2:0-2042,uc002hnl.2:0-6190,uc002hno.2:0-6650,uc002hnl.2:0-6287,uc002hnn.2:0-7227,uc002hnk.2:0-6301,uc002hno.2:0-6553,uc010cuy.2:0-1945,uc002hnm.2:0-6217,uc002hnk.2:0-6398,uc002hnm.2:0-6120,uc010wdc.1:0-840	uc010cvt.2:309-3007,uc002hrs.2:309-3209	ACACA	STAC2	Intrachromosomal_Complex	1710097	40	33	40	0.300751879699	0.952380952381	>3109440/1;pos=308;strand=-,CAGCAAACCTGGATTCTGAAGCCAAGCTCCAGCGATTCAAGCGCTCCCCA,>2275794/1;pos=302;strand=-,CTGATCCAGCAAACCTGGATTCTGAAGCCAAGCTCCAGCGATTCAAGCGC,>318809/2;pos=300;strand=-,AGCTGATCCAGCAAACCTGGATTCTGAAGCCAAGCTCCAGCGATTCAAGC,>3116447/1;pos=323;strand=-,CTGAAGCCAAGCTCCAGCGATTCAAGCGCTCCCTCTCCCTCAAGACCATC,>5401575/1;pos=301;strand=-,GCTGATCCAGCAAACCTGGATTCTGAAGCCAAGCTCCAGCGATTCAAGCG,>11878042/2;pos=306;strand=-,TCCAGCAAACCTGGATTCTGAAGCCAAGCTCCAGCGATTCAAGCGCTCCC,>8100823/2;pos=319;strand=-,GATTCTGAAGCCAAGCTCCAGCGATTCAAGCGCTCCCTCTCCCTCAAGAC,>5937271/2;pos=317;strand=-,TGGATTCTGAAGCCAAGCTCCAGCGATTCAAGCGCTCCCTCTCCCTCAAG,>4163511/1;pos=312;strand=-,AAACCTGGATTCTGAAGCCAAGCTCCAGCGATTCAAGCGCTCCCTCTCCC,>12514117/2;pos=300;strand=-,ATCTGATCCAGCAACCCTGGATTCTGAAGCCAAGCTCCAGCGATTCAAGC,>12317384/2;pos=305;strand=-,ATCCAGCAAACCTGGATTCTGAAGCCAAGCTCCAGCGATTCAAGCGCTCC,>7623838/2;pos=304;strand=-,GATCCAGCAAACCTGGATTCTGAAGCCAAGCTCCAGCGATTCAAGCGCTC,>10652008/2;pos=311;strand=-,CAAACCTGGATTCTGAAGCCAAGCTCCAGCGATTCAAGCGCTCCCTCTCC,>1483674/2;pos=319;strand=-,GATTCTGAAGCCAAGCTCCAGCGATTCAAGCGCTCCCTCTCCCGCAAGAC,>1758404/1;pos=321;strand=-,TTCTGAAGCCAAGCTCCAGCGATTCAAGCGCTCCCTCTCCCTCAAGACCA,>6757985/2;pos=318;strand=-,GGATTCTGAAGCCAAGCTCCAGCGATTCAAGCGCTCCCTCTCCCTCAAGA,>12116563/1;pos=309;strand=-,AGCAAACCTGGATTCTGAAGCCAAGCTCCAGCGATTCAAGCGCTCCCTCC,>7625704/2;pos=6374;strand=+,AGCAAACCTGGATTCTGAAGCCAAGCTCCAGCGATTCAAGCGCTCCCTCT,>2347350/2;pos=6374;strand=+,AGCAAACCTGGATTCTGAAGCCAAGCTCCAGCGATTCAAGAGCTCCCTCT,>3290763/1;pos=6375;strand=+,GCAAACCTGGATTCTGAAGCCAAGCTCCAGCGATTCAAGCGCTCCCTCTC	C1342850,C3621846,C3621778,C3621777,C4199346,C1352982,C1352981,C1340239,C1353749,C1339481,C1342851,C1343608,C1339482,C4199302,C4199303,C1350368,C1346988,C1346220,C1349600,C1349601,C1346219
chr17	57970443	57970686	chr17	47007461	47021337	CLUSTER67	32	+	-	uc010ddj.1:0-243,uc010wom.1:0-243,uc010won.1:0-243,uc010ddj.1:0-293,uc010won.1:0-293,uc002ixy.2:0-243,uc002ixy.2:0-293	uc002iok.2:112-1207,uc002ioj.2:112-1210,uc002iok.2:163-1207,uc002ioj.2:163-1210	RPS6KB1	SNF8	Intrachromsomal_Diverging	-10948288	32	23	30	0.65306122449	0.162436548223	>4901221/2;pos=129;strand=-,AGGAGGGGGCCAAGTATAAGGAGCGAGGGACGGTCTTGGCTGAGGACCAG,>5207242/2;pos=117;strand=-,AGGATGAGCTGGAGGAGGGGGCCAAGTATAAGGAGCGAGGGACGGTCTTG,>7320277/1;pos=106;strand=-,CGCGGGCTCTGAGGATGAGCTGGAGGAGGGGGCCAAGTATAAGGAGCGAG,>704274/1;pos=107;strand=-,GCGGGCTCTGAGGATGAGCTGGAGGAGGGGGCCAAGTATAAGGAGCGAGG,>6935349/1;pos=111;strand=-,GCTCTGAGGATGATCTGGAGGAGGGGGCCAAGTATAAGGAGCGAGGGACA,>1719123/1;pos=109;strand=-,GGGCTCTGAGGATGAGCTGGAGGAGGGGGCCAAGTATAAGGAGCGAGGGA,>7019787/1;pos=109;strand=-,GGGCTCTGAGGATGAGCTGGAGGAGGGGGCCAAGTATAAGGAGCGAGGGG,>11182558/2;pos=110;strand=-,GGCTCTGAGGATGAGCTGGAGGAGGGGGCCAAGTATAAGGAGCGAGGGAC,>5696451/2;pos=199;strand=+,GACCAGCCAGAGGACGCGGGCTCTGAGGATGAGCTGGAGGAGGGGGCCAA,>5696451/1;pos=126;strand=-,TGGAGGAGGGGGCCAAGTATAAGGAGCGAGGGACGGTCTTGGCTGAGGAC,>4310863/1;pos=204;strand=+,GCCAGAGGACGCGGGCTCTGAGGATGAGCTGGAGGAGGGGGCCAAGTATA,>4138888/2;pos=208;strand=+,GAGGACGCGGGCTCTGAGGATGAGCTGGAGGAGGGGGCCAAGTATAAGGA,>116769/2;pos=215;strand=+,CGGGCTCTGAGGATGAGCTGGAGGAGGGGGCCAAGTATAAGGAGCGAGGG,>13104593/2;pos=215;strand=+,CGGGCTCTGAGGATGAGCTGGAGGAGGGGGCAAAGTATAAGGAGCGAGGG,>1628348/1;pos=221;strand=+,CTGAGGGTGAGCTGGAGGAGGGGGCCAAGTATAAGGAGCGAGGGACGGTC,>4833091/1;pos=221;strand=+,CTGAGGATGAGCTGGAGGAGGGGGCCAAGTATAAGGAGCGAGGGACGGTC,>4292692/2;pos=108;strand=-,CGGGCTCTGAGGATGAGCTGGAGGAGGGGGCCAAGTATAAGGAGCGAGAG,>10171420/1;pos=109;strand=-,GGGCTCTGAGGATGAGCTGGAGGAGGGGGCCAAGTATAAGGAGCGAGGGC	C4250331,C1517849,C1517848,C4250327,C4250328,C4250332,C1517845,C1517844,C4250190,C4250191,C4250194,C4250195,C3662189,C3662194,C3662193,C3662190
chr20	56964245	56964573	chr17	37921201	37934020	CLUSTER19	20	+	-	uc002xzb.2:0-328,uc002xzc.2:0-328,uc002xza.2:0-328,uc010zzo.1:0-328	uc010cwd.2:225-2004,uc002hsu.2:654-2433,uc002htb.2:654-2559,uc002hsx.2:486-2265,uc010cwf.2:225-1887,uc002hsy.2:654-2316,uc002htd.2:552-2331,uc010cwh.2:393-2172,uc002htc.2:486-2391	VAPB,VAP-B	IKZF3	Interchromosomal	None	20	10	20	0.190476190476	0.909090909091	>275070/2;pos=218;strand=-,CCTCGAGCCGCAGCACGAGCTCAAATTCCGAGCAAGTGCGGAGGCAAGAC,>7334780/1;pos=231;strand=-,CACGAGCTCAAATTCCGAGCAAGTGCGGAGGCAAGACACATCAAAGCAGA,>8209892/2;pos=232;strand=-,ACGAGCTCAAATTCCGAGCAAGTGCGGAGGCAAGACACATCAAAGCAGAG,>11783668/2;pos=240;strand=-,AAATTCCGAGCAAGTGCGGAGGCAAGACACATCAAAGCAGAGATGGGAAG,>8224249/1;pos=231;strand=-,CACGAGCTCAAATTCCGAGCAAGTGCGGAGGCAAGACACATCAAAGCAGC,>7860279/1;pos=236;strand=-,GCTCAAATTCCGAGCAAGTGCGGAGGCAAGACACATCAAAGCAGAGATGG,>5350460/1;pos=284;strand=+,AGCAGGTCCTGAGCCTCGAGCCGCAGCACGAGCTCAAATTCCGAGCAAGT,>3965796/2;pos=289;strand=+,GTCCTGAGCCTCGAGCCGCAGCACGAGCTCAAATTCCGAGCAAGTGCGGA,>6425307/1;pos=293;strand=+,TGAGCCTCGAGCCGCAGCACGAGCTCAAATTCCGAGCAAGTTCGGAGGCA,>6827688/1;pos=293;strand=+,TGAGCCTCGAGCCGCAGCACGAGCTCAAATTCCGAGCAAGTGCGGAGGCA	C2053613,C2054100,C2053851,C2054105,C2053853,C2053618,C2053859,C4362536,C2053115,C4362546,C2053371,C4362804,C2053356,C2053111,C2053358,C2054096,C2052849,C2052865,C4362799,C4362544,C2052869,C2053863,C2053843,C2053609,C4362795,C4362552,C2053368,C2053364,C2053866,C2053120,C2053348,C4362559,C2052859,C2052872,C2052857,C4362556
chr17	48943419	48943706	chr17	35874901	35880751	CLUSTER57	19	-	-	uc010wmy.1:0-287	uc002hod.2:3491-7764,uc002hoc.2:3659-7932,uc010wdf.1:3662-7935,uc010wde.1:3731-8004,uc002hob.2:3749-8133,uc010wdg.1:3278-7551,uc002hod.2:3380-7764,uc002hoe.2:3515-7899,uc002hoe.2:3626-7899,uc002hob.2:3860-8133,uc002hoa.2:3896-8169	TOB1	SYNRG	Intrachromosomal	-12970855	19	11	19	0.301587301587	0.422222222222	>10539045/2;pos=3769;strand=-,AGCCCCCAGATGAAAACTCGCTGGATTTTTCCTCCTGTATGTTACGGCCA,>2038903/1;pos=3766;strand=-,AGCAGCCCCCAGATGAAAACTCGCTGGATTTTTCCTCCTGTATGTTACGG,>12337963/2;pos=3755;strand=-,AGCCGCCCCGAAGCAGCCCCCAGATGAAAACTCGCTGGATTTTTCCTCCC,>2164135/1;pos=3765;strand=-,AAGCAGCCCCCAGATGAAAACTCGCTGGATTTTTCCTCCTGTATGTTACG,>8338151/2;pos=3764;strand=-,GAAGCAGCCCCCAGATGAAAACTCGCTGGATTTTTCCTCCTGTATGTTAC,>719499/2;pos=3767;strand=-,GCAGCCCCCAGATGAAAACTCGCTGGATTTTTCCTCCTGTATGTTACGGC,>7010055/1;pos=264;strand=+,GTCCAAGCCGCCCCGAAGCAGCCCCCAGATGAAAACTCGCTGGATTTTTC	C4245885,C4245887,C4245835,C4245834,C4245837,C4245836,C4245827,C4245833,C4245890,C4245829,C4245830
chr20	45852970	45867893	chr20	34078463	34099802	CLUSTER3	16	-	+	uc002xtc.1:0-3177,uc002xtd.1:0-3102,uc002xsx.1:0-3234,uc002xtf.1:0-3315,uc010zxz.1:0-2859,uc002xss.2:0-3439,uc010zxy.1:0-3358,uc002xsr.1:0-844,uc010zya.1:0-3386,uc002xsw.1:0-3234,uc002xsv.1:0-3025,uc002xsu.1:0-2860,uc002xta.1:0-3449,uc002xtb.1:0-3177,uc002xst.1:0-2887,uc002xte.1:0-3248,uc002xsy.1:0-3028,uc010ghq.1:0-2119,uc010ghr.1:0-2947,uc002xsz.1:0-2957	uc010zve.1:2815-7904,uc002xcm.2:3257-8346	ZMYND8,KIAA1125	CEP250	Intrachromosomal_Converging	-11738578	16	5	16	0.380952380952	0.8	>6795151/1;pos=800;strand=+,AGCAAGCCCACTGGCCTGAGCACATGAAGTCCTGCACCCAGTCAGGAGAA,>12035494/1;pos=802;strand=+,CAAGCCCACTGGCCTGAGCACATGAAGTCCTGCACCCAGTCAGGAGAAGG,>826074/2;pos=805;strand=+,GCCCACTGGCCTGAGCACATGAAGTCCTGCACCCAGTCAGGAGAAGGAGC,>2205979/2;pos=812;strand=+,GGCCTGAGCACATGAAGTCCTGCACCCAGTCAGGAGAAGGAGCGCTCCTG,>4618817/1;pos=812;strand=+,GGCCTGAGCACATGAAGTCCTGCACCCAGTTAGGAGAAGGAGCGCTCCTG	C2034603,C3744934,C4357445,C2033335,C2031952,C3744429,C2029853,C2030906,C2032496,C2027675,C3744273,C4356781,C2032827,C2031774,C2033866,C2029660,C2028836,C2027351,C4357986,C2027357,C4357794,C2028161,C2033005,C2028656,C2034411,C2032306,C2033513,C4356971,C2030363,C2030182,C2028329,C2027853,C2030716,C3744758,C2031253,C2031444,C4357277,C2029141,C2034058,C2029309
chr17	37607291	37607527	chr17	53218671	53241449	CLUSTER69	10	-	+	uc002hru.2:0-236,uc010wee.1:0-236,uc002hrv.3:0-236	uc010dcd.1:1630-5979,uc002iuf.1:1696-6045	MED1	STXBP4	Intrachromsomal_Diverging	15438598	10	3	10	0.0735294117647	0.625	>12390400/2;pos=1692;strand=-,CAGTATGAAAGCTCAGGGGGAAACCGAGGGTTTACCTTATGGGTGGGAGG,>8571135/1;pos=1706;strand=-,AGGGGGAAACCGAGGGTTTACCTTATGGGTGGGAGGAAGCTTACACAGCA,>10813841/2;pos=194;strand=+,CTTCTCCTCGCCTTCAGGATGAAAGCTCAGGGGGAAACCGAGGGTTTACC	C1396194,C1395934,C1396622,C4212497,C4212071,C1395729
chrM	12338	14645	chrM	1709	4262	CLUSTER46	10	+	+	uc004cox.3:0-2307	uc004cos.3:0-2553	MTND5	TVAS5	Intrachromosomal_Complex	-8075	10	0	10	1.0	1.0		C3236246
chr20	56884771	56886178	chr19	17256207	17324103	CLUSTER6	9	+	+	uc002xyz.2:0-377,uc002xyz.2:0-297	uc002nfi.2:992-7621,uc010eak.2:992-7609,uc002nfj.1:898-5939	RAB22A	MYO9B	Interchromosomal	None	9	5	9	0.157894736842	0.45	>10932028/2;pos=1012;strand=-,ATAGGGCTTTTGGAAATGCCAAGACAGCCCACAACAACAACTCCAGCCGG,>9791785/2;pos=1010;strand=-,CAATAGGGCTTTTGGAAATGCCAAGACAGCCCACAACAACAACTCCAGCG,>9463647/1;pos=342;strand=+,AGACAGTTTTGATCCAAACATCAACCCAACAATAGGGCTTTTGGAAATGC,>5709436/2;pos=346;strand=+,AGTTTTGATCCAAACATCAACCCAACAATAGGGCTTTTGGAAATGCCAAG,>9376902/1;pos=348;strand=+,TTTTGATCCAAACATCAACCCAACAATAGGGCTTTTGGAAATGCCAAGAC	C2052421,C2052419,C2052417,C2052416,C2052581,C2052582
chr17	37595418	37607527	chr17	48548389	48552200	CLUSTER14	8	-	+	uc002hru.2:0-639,uc002hrv.3:0-639	uc010dbt.1:104-871	MED1	UNQ493	Intrachromsomal_Diverging	10938162	8	6	8	0.0808080808081	1.0	>12674787/2;pos=103;strand=-,TGTCCGGAGCTTGTACAGCAGCTAAGGTTGCTTATGGAACCACAGAGAAC,>3881485/2;pos=111;strand=-,GCTTGTACAGCAGCTAAGGTTGCTTATGGAACCACAGAGAACAGTCCCGT,>6083543/1;pos=601;strand=+,GAATCCTGTGAGCTGTCCGGAGCTTGTACAGCAGCTAAGGTTGCTTATGG,>7506866/2;pos=605;strand=+,CCTGTGAGCTGTCCGGAGCTTGTACAGCAGCTAAGGTTGCTTATGGAACC,>298410/1;pos=608;strand=+,GTGAGCTGTCCGGAGCTTGTACAGCAGCTAAGGTTGCTTATGGAACCACA,>7264145/2;pos=615;strand=+,GTCCGGAGCTTGTACAGCAGCTAAGGTTGCTTATGGAACCACAGAGAACA	C1395931,C1396619
chr7	77325213	77326662	chr7	77313168	77314643	CLUSTER41	7	-	-	uc003ugj.1:0-1449	uc003ugk.3:0-525	BC037783	AF290475	Overlapping_Complex	0	7	0	7	1.0	1.0		C2884019
chr7	45808259	45808617	chr7	56078746	56088924	CLUSTER34	7	-	-	uc003tnf.3:0-358,uc003tnh.2:0-358	uc003trg.2:344-1749,uc003tri.2:758-2163,uc003trh.2:710-2115	SEPT13	PSPH	Intrachromosomal_Complex	10270128	7	5	6	0.875	0.155555555556	>2754995/1;pos=317;strand=+,CAGCTGCAGCCCCGGCGGCGCACTCGCCTCACCTGAGCCTGGGAGGAAAA,>5506508/2;pos=320;strand=+,CTGCAGCCCCGGCGGCGCACTCGCCTCACCTGAGCCTGGGAGGAAAATTC,>4422610/2;pos=324;strand=+,AGCCCCGGCGGCGCACTCGCCTCACCTGAGCCTGGGAGGAAAATTCTTCC,>10851040/1;pos=325;strand=+,GCCCCGGCGGCGCACTCGCCTCACCTGAGCCTGGGAGGAAAATTCTTCCA	C2864910,C2864917,C2864914,C2864895,C2864891,C2864898
chr20	62496590	62500794	chr20	62559688	62565394	CLUSTER35	6	+	+	uc002ygz.2:0-293,uc002ygy.2:0-293,uc002yha.2:0-293,uc002yhd.2:0-293,uc002yhb.2:0-293,uc002yhc.2:0-293	uc002yhf.2:159-3239,uc002yhg.1:159-1600,uc002yhh.2:879-4033	TPD52L2	DNAJC5,FLJ00118	Read_Through	3629	6	3	6	0.0625	0.260869565217	>4055790/2;pos=175;strand=-,CTTACCAAGAATAGCCTAACATGGCAGACCAGAGACAGCGCTCACTGTCT,>5838446/2;pos=253;strand=+,CAGAGGCTGAGGAGGAGGAGCTCAGGGCTGAGCTTACCAAGAATAGCCTA,>5662695/2;pos=266;strand=+,GGAGGAGCTTAGGGCTGAGCTTACCAAGAATAGCCTAACATGGCAGACCA	C2068893,C2068891,C2069159,C2069069,C2068889,C2069071,C2069157,C2068799,C2069247,C2068982,C2069067,C2069245,C2069155,C2068980,C2068978,C2068801,C2068803,C2069243
chr16	70024500	70099851	chr16	22535141	22547828	CLUSTER37	8	-	+	uc002eyc.2:0-1891	uc010bxg.2:302-3705,uc010vbw.1:196-2266,uc010vbv.1:399-3802,uc010bxi.2:123-3526	PDXDC2	LOC100132247,NPIPL3	Intrachromosomal_Converging	-47462381	8	2	6	1.0	0.666666666667	>9779574/1;pos=1852;strand=+,AGCAGGGACAGGGAGCTGGTTGGGGAGGACCAGAAATCCGGTTATCACTA,>9779609/1;pos=1852;strand=+,AGCAGGGACAGGGAGCTGGTTGGGGAGGACCAGAAATCAGGTTATCAATA	C1219866,C1219865,C1219862,C1219861
chr16	70024500	70099851	chr16	30234351	30246900	CLUSTER48	8	-	-	uc002eyc.2:0-1891	uc010vem.1:195-3490,uc010vel.1:158-3453	PDXDC2	NPIPL3	Intrachromosomal	-39753277	8	2	6	1.0	0.666666666667	>9779574/1;pos=1852;strand=+,AGCAGGGACAGGGAGCTGGTTGGGGAGGACCAGAAATCCGGTTATCACTA,>9779609/1;pos=1852;strand=+,AGCAGGGACAGGGAGCTGGTTGGGGAGGACCAGAAATCAGGTTATCAATA	C1219870,C1219869
chr16	70024500	70099851	chr16	21415198	21426406	CLUSTER52	8	-	-	uc002eyc.2:0-1891	uc002dix.1:302-1604,uc010bws.2:237-2307,uc002diu.1:2443-4269,uc010vbg.1:123-1579	PDXDC2	LOC23117,NPIPL3	Intrachromosomal	-48538953	8	2	6	1.0	0.666666666667	>9779574/1;pos=1852;strand=+,AGCAGGGACAGGGAGCTGGTTGGGGAGGACCAGAAATCCGGTTATCACTA,>9779609/1;pos=1852;strand=+,AGCAGGGACAGGGAGCTGGTTGGGGAGGACCAGAAATCAGGTTATCAATA	C1219864,C1219761,C1219860,C1219762
chr16	70024500	70099851	chr16	29496996	29506928	CLUSTER78	8	-	-	uc002eyc.2:0-1891	uc010vdr.1:120-800	PDXDC2	NPIPL3	Intrachromosomal	-40493296	8	2	6	1.0	0.727272727273	>9779574/1;pos=1852;strand=+,AGCAGGGACAGGGAGCTGGTTGGGGAGGACCAGAAATCCGGTTATCACTA,>9779609/1;pos=1852;strand=+,AGCAGGGACAGGGAGCTGGTTGGGGAGGACCAGAAATCAGGTTATCAATA	C1219867
chr17	37856254	37856564	chr17	61509666	61515531	CLUSTER12	6	+	-	uc010wek.1:0-310,uc002hso.2:0-310,uc010cwb.2:0-310,uc002hsp.2:0-310,uc002hsn.1:0-310	uc002jaq.2:0-3013	ERBB2,HER-2	CYB561	Intrachromosomal_Converging	23641082	6	0	6	0.0179104477612	1.0		C3649062,C4222187,C1422854,C1418597,C1432284
chrM	237	368	chrM	1709	4262	CLUSTER40	6	-	+	uc004coq.3:0-131	uc004cos.3:0-2553	DQ582201	TVAS5	Intrachromsomal_Diverging	1340	6	0	6	1.0	1.0		C3157069
chr20	57226328	57227143	chr20	55929088	55953518	CLUSTER28	5	+	+	uc002xzi.2:0-866,uc002xzj.2:0-815,uc002xzm.2:0-866,uc010zzq.1:0-227	uc002xyh.2:88-1564,uc002xyg.2:334-1810,uc002xyi.2:358-1834,uc010gis.1:334-1885,uc002xyh.2:185-1564,uc010gis.1:431-1885,uc010git.1:431-1911,uc002xyg.2:431-1810,uc002xyi.2:455-1834,uc010git.1:334-1911	STX16	RAE1	Intrachromosomal_Complex	-1272809	5	3	5	0.104166666667	0.0181818181818	>4929041/2;pos=770;strand=+,GTTGCGGAATAATTCCATCCAAAACCGGCAGCTGTCAGCCGAGCAAGTTC,>13400941/2;pos=782;strand=+,TTCCATCCAAAACCGGCAGCTGTTAGCCGAGCAAGTTCAAAATGAGCCTA,>13424576/1;pos=795;strand=+,TGGCAGCTGTTAGCCGAGCAAGTTCAAAATGAGCCTGTTTGGAACAACCT	C2054762,C2054467,C2054279,C2054278,C2054765,C4362993,C2054275,C4362967,C2054405,C2054341,C2054469,C2054343,C2054401,C4362963,C4362995,C4362965,C2054828,C2054830,C2054766
chr4	77507293	77507622	chr4	77631309	77704403	CLUSTER50	5	+	+	uc011cby.1:0-329	uc011cbx.1:1276-11016,uc011cbz.1:245-3878	AK097800	SHROOM3,hShrmL	Overlapping_Complex	0	5	3	5	1.0	1.0	>4466151/1;pos=1297;strand=-,TAAGAGATGTGTGCACAGACCCAGGCCATGCAGATACTGGTGCCTCTAAC,>12585074/1;pos=284;strand=+,AGATAACTGAGGACAATGGACCTGCCTGGGCATAGACTTCCTTAAGAGAT,>3707134/1;pos=301;strand=+,GGACCTGCCTGGGCATAGACTTCCTTAAGAGATGTGTGCACAGACCCAGG	C4435117,C4435116
chrM	14762	15888	chrM	1709	4262	CLUSTER45	5	+	+	uc004coy.2:0-1126	uc004cos.3:0-2553	cytochrome_b	TVAS5	Intrachromosomal_Complex	-10499	5	0	5	1.0	1.0		C3240767
chr19	15443101	15443342	chr19	14072343	14104707	CLUSTER64	4	-	-	uc002nat.3:0-241	uc002mxv.2:220-4375,uc002mxv.2:591-4375,uc010dzi.2:220-2121,uc010dzi.2:591-2121	BRD4	RFX1	Intrachromosomal	-1246671	4	2	4	0.190476190476	0.8	>1803856/1;pos=238;strand=-,GTCTCAGGAAATAAAAAAAAAAAAAAGCCTTATTTATTATCATTTTCCCC,>5175941/1;pos=199;strand=+,TGGCGGACGGCCGGCGGGGGCGGCGTGCGGCCTAGCGTCTCAGGAATTAA	C1690883,C1690873,C1690874,C1690884
chr4	76649460	76649795	chr4	76567955	76587233	CLUSTER74	4	-	-	uc010iiy.2:0-335	uc003hir.2:141-4272,uc003his.2:276-4407,uc003hit.2:276-4308	AK311578	G3BP2	Read_Through	-50354	4	2	4	0.571428571429	0.25	>12739226/2;pos=290;strand=+,ATTTTGTTGAGTCGAAAGTGAAATTTTCCTTTGGCCAACGTGACAGCATT,>12739226/1;pos=155;strand=-,CAACGTGACAGCATTTGACATTGTGCAGCAAAGAAATGGTTATGGAGAAG,>10943667/2;pos=312;strand=+,ATTTTCCTTTGGCCAACGTGACAGCGTTTGACATTGTGCAGCAAAGAAAT	C3808480,C3808479,C3808478
chr20	61569148	61569274	chr20	36611425	36634799	CLUSTER16	4	-	-	uc002ydu.1:0-126,uc002yds.1:0-126,uc002ydx.1:0-126	uc002xhl.2:2511-3911,uc002xhm.2:2371-3771	DIDO1	KIAA0406	Intrachromosomal	-24847256	4	1	4	0.4	0.266666666667	>5885398/2;pos=103;strand=+,GTCTACACTGAGTCGGAGGCGAAGCCCAGTGGTTCCCAGACACAGGTAAT	C2063064,C2063062,C2063192,C2063190,C2063138,C2063140
chr17	60129898	60142643	chr17	59469338	59470198	CLUSTER30	4	-	+	uc002izo.2:0-546	uc002iyw.3:2768-3719,uc002iyw.3:2859-3719	MED13	BCAS3	Intrachromosomal_Converging	-549768	4	1	4	0.4	0.166666666667	>7822579/2;pos=518;strand=+,GAAAAAGATGAAAAACCTATAAATAAAAGAACTTCAGCGAGAGGGAAGCA	C1520144,C1520145
chr17	57232492	57232800	chr17	34851600	34863351	CLUSTER31	4	-	-	uc002ixd.2:0-308,uc002ixe.2:0-308	uc010wcy.1:2345-4399,uc010cuu.2:2100-5420,uc010wcz.1:2707-3150,uc010cuu.2:1978-5420,uc010wcz.1:2585-3150,uc010wcy.1:2223-4399	SKA2,FAM33A	MYO19	Intrachromosomal	-22296268	4	1	4	0.117647058824	0.0481927710843	>10814430/1;pos=264;strand=+,CAACTATTCAACATGGAGGCGGAGGTCGATAAGCTGGAACTGATGGAGGA	C1478079,C1478335,C1478334,C1478078,C1478080,C1478036,C1478035,C1478375,C1478374,C1478377,C1478376,C1478081
chr2	96676299	96676480	chr2	96071025	96078878	CLUSTER5	3	+	+	uc010fht.2:0-181	uc002sus.2:173-1422	LOC729234	FAHD2A	Intrachromosomal_Complex	-597420	3	2	3	1.0	0.5	>1260012/1;pos=146;strand=+,CGCAGGAGGACCGGCTGCCGCCGCCGCCGCCGCCAGCAGAGCCAAGCACA,>5091319/1;pos=146;strand=+,CGCAGGAGGACCGGCTGCCGCCCCCGCCGCCGCCCGCAGAGCCAAGCACA	C3715784
chr2	97760438	97760582	chr2	96071025	96078878	CLUSTER20	3	-	+	uc002sxm.2:0-144	uc002sus.2:173-1422	FAHD2B	FAHD2A	Intrachromosomal_Converging	-1670445	3	2	3	0.5	0.5	>1260012/1;pos=109;strand=+,CGCAGGAGGACCGGCTGCCGCCGCCGCCGCCGCCAGCAGAGCCAAGCACA,>5091319/1;pos=109;strand=+,CGCAGGAGGACCGGCTGCCGCCCCCGCCGCCGCCCGCAGAGCCAAGCACA	C1855797
chr2	10262735	10269281	chr2	10281981	10351856	CLUSTER43	3	+	+	uc002rah.2:0-1207	uc002rai.1:260-1901	RRM2	C2orf48	Read_Through	9960	3	2	3	0.0361445783133	1.0	>9760240/2;pos=1177;strand=+,CAGACTTATGCTGGAACTGGGTTTTAGCAAGGTGCTGGGAGACCGTGAAG,>12055549/2;pos=1179;strand=+,GACTTATGCTGGAACTGGGTTTTAGCAAGGTGCTGGGAGACCGTGAAGTG	C1796195
chr17	37793412	37793484	chr20	53259997	53267709	CLUSTER9	3	+	+	uc010weg.1:0-72,uc002hse.2:0-72,uc010wei.1:0-72,uc010weh.1:0-72,uc002hsd.2:0-72	uc002xwy.2:955-1831,uc002xwz.2:890-1766,uc010gin.2:856-1732	STARD3	DOK5	Interchromosomal	None	3	1	3	0.0120967741935	1.0	>1183428/2;pos=46;strand=+,GCCGGGGCCGTGGCTGACATGGAGCAGCTCCAGATGAAGATGAGTGAGCG	C1401825,C4219080,C1401827,C4218749,C1403794,C4218747,C4217791,C4216585,C4216643,C1403451,C4217448,C4217446,C4216583,C1403449,C1402177
chr10	71906289	71906432	chr10	71872030	71883853	CLUSTER59	3	-	-	uc001jqq.2:0-143	uc001jqp.1:201-3239,uc010qjg.1:0-2564	TYSND1	AIFM2	Read_Through	-5044	3	1	3	0.6	0.5	>11228507/1;pos=218;strand=-,GCTGCATGTGCCTGATTTGAGATGGGGTCCCAGGTCTCGGTGGAATCGGG	C0344504,C0344515
chr3	33055548	33138314	chr3	32483332	32496333	CLUSTER71	3	-	+	uc003cfh.1:0-1762,uc003cfi.1:0-1850,uc011axk.1:0-1994,uc003cfj.1:0-1457	uc003cez.1:395-1251,uc003cey.1:395-1350	GLB1	CMTM7	Intrachromosomal_Converging	-541766	3	1	3	0.25	1.0	>396065/1;pos=397;strand=-,TCCAGTTTCCTGGATGGACCAAGGTCACCCTGCTGATTGCCTTCATCTGG	C2233606,C2233630,C2233608,C2233632,C4406410,C4406412,C2233648,C2233650
chr19	17326155	17326879	chr18	47014859	47017308	CLUSTER32	3	+	-	uc010eal.1:0-290,uc002nfn.2:0-290,uc002nfo.2:0-290	uc002ldn.2:0-514	USE1	RPL17	Interchromosomal	None	3	0	3	0.214285714286	1.0		C1694503,C3691057,C1694493
chr1	155278539	155278756	chr15	43432319	43433465	CLUSTER42	3	+	-	uc001fkc.2:0-217,uc001fkd.2:0-217	uc001zqs.1:0-1146	FDPS	CR599671	Interchromosomal	None	3	0	3	0.0535714285714	1.0		C0222073,C0222505
chrM	7587	8295	chrM	1709	4262	CLUSTER47	3	+	+	uc004cou.3:0-708	uc004cos.3:0-2553	X64709	TVAS5	Intrachromosomal_Complex	-3324	3	0	3	1.0	1.0		C3221247
chr13	113556509	113556685	chr13	113678958	113752863	CLUSTER51	3	+	+	uc001vso.2:0-176	uc001vsq.2:356-5446,uc001vss.3:314-3409,uc010tjr.1:322-5225,uc010tjs.1:314-5217,uc001vsr.2:502-5405,uc001vsu.2:356-5259	BC035340	MCF2L	Read_Through	10279	3	0	3	1.0	0.136363636364		C0859793,C0859781,C0859791,C0859784,C0859786,C0859787
chrM	7587	8295	chrM	237	368	CLUSTER53	3	+	-	uc004cou.3:0-708	uc004coq.3:0-131	X64709	DQ582201	Intrachromsomal_Diverging	-7218	3	0	3	1.0	1.0		C3221246
chr8	71315935	71316020	chr8	81550769	81733850	CLUSTER66	3	-	-	uc003xyn.1:0-85	uc003yby.1:211-4302	NCOA2	ZNF704	Intrachromosomal_Complex	10234748	3	0	3	0.5	1.0		C2960956
chr17	36932850	36943173	chr17	56809845	56811690	CLUSTER68	3	-	+	uc010wdu.1:0-676	uc002iwu.2:1007-1279,uc002iww.2:840-1112,uc010ddc.2:1802-2074	PIP4K2B	RAD51C	Intrachromsomal_Diverging	19826789	3	0	3	1.0	0.0697674418605		C4204248,C4204791,C4204242
chr17	37006352	37010053	chr11	65265233	65273937	CLUSTER17	9	-	+	uc002hqy.1:0-2820	uc010roh.1:0-8704	LOC222901	AlphaTFEB	Interchromosomal	None	9	9	2	1.0	1.0	>2570467/2;pos=4;strand=-,CAGCATTGCATGATTCTCCAGTATATTTGTAAAAAATAAAAAAAACCTAA,>11063540/1;pos=5;strand=-,AGCATTGCAGGATTCTCCAGTATATTTGTAAAAAATAAAAAAAAAATAAA,>12592190/1;pos=5;strand=-,AGCATTACATGATTCTCCAGTATATTTGTAAAAAATAAAAAAAAACTAAA,>2312392/2;pos=5;strand=-,AGCATTGCATGATTCTCCAGTATATTTGTAAAAAAAAAAAAAAAACTAAA,>2402262/1;pos=5;strand=-,AGCACTGCATGATTCTCCAGTATATTTGTAAAAAATAAAAAAAAACTAAA,>2578145/1;pos=5;strand=-,AGCATTGGATGATTCTCCAGTATATTTGTAAAAAATAAAAAAAAACTAAA,>3931795/2;pos=5;strand=-,AGCATTGCATGATTCTCCATTATATTTGTAAAAAATAAAAAAAAACTAAA,>5996992/2;pos=5;strand=-,TGCATTGCATGATTCTCCAGTATATTTGTAAAAAATAAAAAAAAACTAAA,>7521475/2;pos=5;strand=-,AGTATTGCATGATTCTCCAGTATATTTGTAAAAAATAAAAAAAAACTAAA	C1375452
chr10	49207727	49207825	chr10	75404645	75414038	CLUSTER8	2	-	-	uc010qgj.1:0-98	uc001jut.3:257-4916	FAM25B	SYNPO2L	Intrachromosomal_Complex	26196819	2	2	2	0.666666666667	1.0	>7391368/1;pos=60;strand=+,GCCTGGCCCACCGCACCGAGAAGGCCACCGAGGGAGCCAATTCGAAGACG,>1223843/2;pos=73;strand=+,CACCGAGAAGGCCACCGAGGGAGCCAATTCGAAGACGGAGCCAGGCTGGC	C4014891
chr10	48247662	48247760	chr10	75404645	75414038	CLUSTER15	2	+	-	uc010qge.1:0-98	uc001jut.3:257-4916	FAM25B	SYNPO2L	Intrachromosomal_Converging	27152521	2	2	2	0.666666666667	1.0	>7391368/1;pos=60;strand=+,GCCTGGCCCACCGCACCGAGAAGGCCACCGAGGGAGCCAATTCGAAGACG,>1223843/2;pos=73;strand=+,CACCGAGAAGGCCACCGAGGGAGCCAATTCGAAGACGGAGCCAGGCTGGC	C4014890
chr10	47181590	47181688	chr10	75404645	75414038	CLUSTER29	2	-	-	uc010qfw.1:0-98	uc001jut.3:257-4916	FAM25B	SYNPO2L	Intrachromosomal_Complex	28222956	2	2	2	0.666666666667	1.0	>7391368/1;pos=60;strand=+,GCCTGGCCCACCGCACCGAGAAGGCCACCGAGGGAGCCAATTCGAAGACG,>1223843/2;pos=73;strand=+,CACCGAGAAGGCCACCGAGGGAGCCAATTCGAAGACGGAGCCAGGCTGGC	C4014824
chr10	38679769	38691780	chr4	120414488	120473178	CLUSTER39	2	-	+	uc009xmd.1:0-484	uc003ide.3:75-979	CDC10L	CR610292	Interchromosomal	None	2	2	2	1.0	0.666666666667	>6587266/1;pos=92;strand=-,TTGTTGAGGAAGGGTAGATGTCTACCCAAATGGAATATTGAGTATCAGAG,>2547341/2;pos=452;strand=+,GTTTGTAACTACCTGGCATTGCCTTTTGTTGAGGAAGGGTAGATGTCTAC	C3408714
chr13	113951469	113951810	chr13	113718618	113752863	CLUSTER62	2	+	+	uc010tka.1:0-341,uc001vtm.1:0-341	uc001vsr.2:828-5405,uc001vss.3:640-3409,uc010tjs.1:640-5217,uc001vsq.2:682-5446,uc001vst.1:445-2550,uc001vsu.2:682-5259,uc010tjr.1:648-5225	LAMP1	MCF2L	Intrachromosomal_Complex	-198605	2	2	2	0.0416666666667	0.0666666666667	>409047/1;pos=679;strand=-,CTGCTGCTACTGCTGTTGCTGCTGCTCGGTCATAATGCTGAGCTCCGTAC,>4343937/1;pos=690;strand=-,GCTGTTGCTGCTGCTCGGTCATAATGCTGAGCTCCGTACCAGACTTACAC	C4093716,C4093718,C4093715,C4093714,C0860562,C0860563,C0860564,C0860565,C0860566,C0860847,C0860846,C4093966,C4093967,C4093717
chr10	88780056	88780154	chr10	75404645	75414038	CLUSTER79	2	+	-	uc010qmo.1:0-98	uc001jut.3:257-4916	FAM25A	SYNPO2L	Intrachromsomal_Diverging	-13364223	2	2	2	0.4	1.0	>7391368/1;pos=60;strand=+,GCCTGGCCCACCGCACCGAGAAGGCCACCGAGGGAGCCAATTCGAAGACG,>1223843/2;pos=73;strand=+,CACCGAGAAGGCCACCGAGGGAGCCAATTCGAAGACGGAGCCAGGCTGGC	C4021620
chrX	3778831	3781615	chrX	3735571	3736541	CLUSTER10	2	-	-	uc004crl.2:0-279	uc011mhk.1:546-853,uc004crj.2:934-1241	AK000470	LOC389906	Read_Through	-23634	2	1	2	0.5	0.25	>9518769/1;pos=255;strand=+,TGCTGCCTATGCACTCCATTTACAGAAAAACGTTGACCTCTTGGCGAGAA	C3244233,C3244232
chr22	37581258	37581994	chr22	37521880	37540245	CLUSTER13	2	-	-	uc003aqw.1:0-736,uc003aqz.1:0-3778,uc003aqx.1:0-551,uc003aqy.1:0-551	uc003aqv.1:98-4042	C1QTNF6	IL2RB	Read_Through	-30243	2	1	2	0.0425531914894	1.0	>10120819/2;pos=119;strand=-,AAGGGGCTTCCTTCCTCGGCTCCACCCTGTGGCTGTAATGGCGGCCCCTG	C2158952,C2158965,C2158889,C2159031
chr17	58422842	58469586	chr17	37560543	37604157	CLUSTER44	2	-	-	uc002iyo.1:0-471,uc010wov.1:0-471	uc002hru.2:237-2870,uc010wee.1:237-8012,uc002hrv.3:237-8145	USP32	MED1	Intrachromosomal	-20647163	2	1	2	0.117647058824	0.0120481927711	>2429915/2;pos=439;strand=+,CTTGGGGATGGAGTGCCTCCAAAGGTTGCTGAGAGTCTGAAAAGCTGAGT	C4250567,C1518309,C4250558,C4250559,C1518310,C1518430
chr7	64126511	64139714	chr7	64144465	64147263	CLUSTER72	2	+	+	uc003tte.2:0-312,uc003ttd.2:0-454	uc003ttf.2:90-2759	ZNF107	BC053669	Overlapping_Same	0	2	1	2	0.5	0.5	>33560/2;pos=428;strand=+,AAAAGCCCCGCCTCTGCCTTCGGATAGGAAAGGTTGAAAGAGCCAACGGC	C2866784,C2866792
chrX	3817257	3820041	chrX	3735571	3736541	CLUSTER75	2	-	-	uc004crn.2:0-279	uc011mhk.1:546-853,uc004crj.2:934-1241	AK000470	LOC389906	Intrachromosomal	-62058	2	1	2	0.5	0.25	>9518769/1;pos=255;strand=+,TGCTGCCTATGCACTCCATTTACAGAAAAACGTTGACCTCTTGGCGAGAA	C3244235,C3244234
chr17	41277600	41277787	chr17	41327808	41363706	CLUSTER80	2	+	+	uc010czb.1:0-187,uc002idg.2:0-187,uc002idh.2:0-187,uc002idf.2:0-187	uc010whw.1:74-4369,uc010whv.1:74-4596,uc010whu.1:74-3109,uc010diz.2:450-4972	NBR2	NBR1	Read_Through	30170	2	1	2	0.666666666667	0.333333333333	>1821147/1;pos=449;strand=-,CGCCCTAATGGAGGTCTCCAGTTTCGCCTCACAGCATGGAACCACAGGTT	C1454249,C1454248,C1454243,C1454242,C1454241,C1454247,C1454246,C1454244,C1454238,C1454239,C3655554,C3655555,C1454236,C1454237,C3655552,C3655553
chr1	147931724	147931980	chr1	145004781	145005286	CLUSTER0	2	-	+	uc009wjz.1:0-256,uc009wjy.1:0-256,uc001eqn.2:0-180,uc001eqo.1:0-419,uc001eql.2:0-256,uc009wjx.1:0-256	uc001emi.3:0-505	FLJ39739,BC110832	BC065231	Intrachromosomal_Converging	-2829840	2	0	2	1.0	1.0		C0181360,C0181389,C0181375,C3382780,C3382796,C3382809
chr20	52675186	52687304	chr19	12335503	12336094	CLUSTER1	2	-	-	uc002xws.2:0-409,uc010gil.1:0-409,uc002xwt.2:0-409	uc002mtl.2:1534-2125,uc010dyr.1:1109-1700	BCAS1	GIOT-2	Interchromosomal	None	2	0	2	0.0555555555556	1.0		C2046691,C2047641,C2047549,C2046590,C3748027,C3747944
chr16	21964609	21964777	chr8	42911442	42940923	CLUSTER2	2	+	+	uc010bxa.2:0-168,uc002djx.2:0-168,uc002djy.2:0-168	uc003xps.2:0-1685,uc003xpt.2:0-1599,uc003xpv.2:0-4676,uc003xpu.2:0-1484	UQCRC2	FNTA	Interchromosomal	None	2	0	2	0.1	1.0		C1149447,C1149448,C1148920,C1148921,C1148922,C1148923,C3583150,C3583148,C3583147,C1149445,C3583149,C1149446
chr5	139781429	139903825	chr19	14031370	14041693	CLUSTER4	2	+	+	uc003lft.1:0-2261,uc003lfq.1:0-4672,uc003lfv.1:0-1734,uc003lfs.1:0-4615,uc011czh.1:0-726,uc003lfw.2:0-550,uc003lfu.1:0-3068,uc003lfr.2:0-4615	uc002mxo.2:1655-3639,uc002mxq.1:483-2057,uc002mxp.2:1655-3636,uc010dzh.2:844-2828	FLJ00246,ANKHD1-EIF4EBP3,ANKHD1	CC2D1A	Interchromosomal	None	2	0	2	1.0	0.0740740740741		C2602719,C2603456,C2603139,C2602421,C2602420,C2603170,C2603171,C2603198,C2603206,C2603179,C2603196,C2603197,C2603096,C2603455,C2603454,C4460808,C2603149,C4460797,C4460796,C2603141,C2603140,C4460798,C2602696,C2603071,C2602694,C2602695,C2603464,C2603070,C2602419,C2603169,C2602438,C2603069
chr1	156449378	156460391	chr1	159409549	159410510	CLUSTER7	2	-	+	uc001fpb.2:0-820,uc001fpe.1:0-996,uc001fpc.2:0-996,uc001fpd.2:0-996	uc010piv.1:0-961	MEF2D	OR10J1	Intrachromsomal_Diverging	2949157	2	0	2	0.4	1.0		C0240378,C0240344,C0240327,C0240361
chr17	37856254	37856564	chr15	57210833	57580712	CLUSTER11	2	+	+	uc010wek.1:0-310	uc010bfs.2:0-3186,uc010ugn.1:0-2413,uc002aed.2:0-4711,uc002aea.2:0-4773,uc002aeb.2:0-4783,uc002aec.2:0-4701	ERBB2	TCF12	Interchromosomal	None	2	0	2	0.0833333333333	1.0		C4224280,C4220762,C4220763,C4220764,C4220765,C4225323
chrM	1709	4262	chrM	237	368	CLUSTER18	2	+	-	uc004cos.3:0-2553	uc004coq.3:0-131	TVAS5	DQ582201	Intrachromsomal_Diverging	-1340	2	0	2	1.0	1.0		C3197855
chr17	60536019	60637487	chr1	243219612	243260601	CLUSTER21	2	+	-	uc010ddp.2:0-1098,uc002izz.3:0-1101,uc010wpd.1:0-747,uc002jaa.3:0-1005,uc002izx.3:0-1086	uc001hzq.1:359-3837	TLK1,TLK2	AL137733	Interchromosomal	None	2	0	2	0.125	0.666666666667		C1520319,C1520332,C4250776,C3662330,C1520353
chr20	35973088	36033819	chr8	11679259	11696817	CLUSTER22	2	+	+	uc002xgy.2:0-3995,uc002xgx.2:0-4096	uc011kxj.1:657-2228,uc010lsb.2:789-2360,uc010lsa.1:435-1085,uc011kxk.1:531-2102,uc003wui.2:533-2104,uc003wuj.2:443-2014,uc003wuk.2:582-2153,uc011kxi.1:479-1884,uc011kxh.1:384-1955,uc003wuh.2:721-2292,uc011kxe.1:730-2301	SRC	FDFT1	Interchromosomal	None	2	0	2	1.0	0.0111111111111		C2020328,C2020329,C2020325,C2020326,C2020327,C2020346,C2020347,C2020344,C2020345,C2020342,C2020343,C2020340,C2020341,C2020348,C2020349,C2020350,C2020335,C2020334,C2020333,C2020332,C2020331,C2020330
chr1	144340526	144340773	chr1	145004781	145005286	CLUSTER23	2	-	+	uc001ekv.2:0-247,uc001eks.2:0-183,uc001ekr.3:0-247,uc001ekt.3:0-247	uc001emi.3:0-505	LOC728855	BC065231	Intrachromsomal_Diverging	664007	2	0	2	0.25	1.0		C0177956,C0177970,C0177942,C0177983
chr9	35829222	35829388	chr1	32799441	32801834	CLUSTER24	2	+	-	uc003zyk.2:0-166	uc001bvd.2:0-1544	TMEM8B	MARCKSL1	Interchromosomal	None	2	0	2	1.0	1.0		C3062852
chr4	175204828	175220361	chr1	16133657	16134194	CLUSTER25	2	+	-	uc003its.2:0-393,uc003itr.2:0-502,uc010iro.2:0-393	uc009vol.1:0-537	KIAA1712	UQCRHL	Interchromosomal	None	2	0	2	0.333333333333	1.0		C3813508,C2524818,C2524823
chr1	143744201	143744587	chr1	145004781	145005286	CLUSTER26	2	-	+	uc009whx.2:0-386,uc001ejr.3:0-386,uc001ejp.3:0-386,uc009why.2:0-386	uc001emi.3:0-505	FLJ39739	BC065231	Intrachromsomal_Diverging	1260193	2	0	2	1.0	1.0		C0177871,C3381574,C3381558,C0177856
chr17	37006321	37009681	chrM	237	368	CLUSTER27	2	-	-	uc002hqx.1:0-576,uc002hqw.1:0-600	uc004coq.3:0-131	RPL23	DQ582201	Interchromosomal	None	2	0	2	1.0	1.0		C1367483,C1371260
chr1	224491425	224517872	chr1	225674534	225718340	CLUSTER33	2	-	-	uc001hol.2:0-928,uc010pvf.1:0-928,uc001hok.2:0-1002,uc010pvd.1:0-729,uc010pve.1:0-597	uc001hpc.1:802-13171,uc001hpd.1:802-13108	NVL	ENAH	Intrachromosomal_Complex	1156661	2	0	2	0.222222222222	0.027397260274		C4008100,C4008096,C4008095,C0290499,C4008101,C0290500,C4008105,C4008106,C0290495,C0290494
chr17	60536019	60637487	chr3	197907626	197907735	CLUSTER36	2	+	+	uc010ddp.2:0-1098,uc002izz.3:0-1101,uc010wpd.1:0-747,uc002jaa.3:0-1005,uc002izx.3:0-1086	uc011bup.1:1172-1281,uc011buq.1:196-1497	TLK1,TLK2	FAM157A	Interchromosomal	None	2	0	2	0.125	0.666666666667		C4250785,C1520346,C4250783,C3662341,C3662340,C1520348,C1520367,C1520326,C1520328,C1520366
chr22	29702997	29703143	chr17	48211102	48227383	CLUSTER38	2	+	-	uc003afc.1:0-146,uc010gvm.1:0-146,uc003afb.1:0-146,uc003afd.1:0-146	uc002iqh.3:474-4026	GAS2L1	PPP1R9B	Interchromosomal	None	2	0	2	0.5	0.181818181818		C2119064,C2119148,C3758539,C2119232
chr20	57226328	57248767	chr20	57266782	57291367	CLUSTER49	2	+	+	uc002xzi.2:0-1607,uc010zzq.1:0-805,uc002xzk.2:0-1556,uc002xzm.2:0-1595,uc002xzl.2:0-1393,uc002xzj.2:0-1544	uc010gjo.1:0-2511	STX16	NPEPL1	Read_Through	12201	2	0	2	0.0740740740741	1.0		C4362996,C2054471,C2054345,C2054832,C2054706,C2054607
chr7	75625656	75634722	chr7	75616303	75621875	CLUSTER54	2	-	-	uc003uef.2:0-570,uc003uel.2:0-1414,uc003uek.3:0-953,uc011kgg.1:0-855,uc003uej.3:0-1244,uc003ueh.2:0-822,uc011kgf.1:0-709,uc003uem.2:0-1417	uc003uee.2:185-1572,uc003uec.2:185-1260	MKSTYX,STYXL1,DKFZp686O05147	TMEM120A	Read_Through	-1663	2	0	2	1.0	0.0740740740741		C2881062,C2881144,C2881147,C2881065,C2881101,C2881081,C2881047,C2881084,C2881104,C2881050,C2881122,C2881125,C4784394,C4784377,C4784397,C4784380
chr1	149576453	149576700	chr1	145004781	145005286	CLUSTER55	2	+	+	uc001esk.3:0-247,uc009wlc.2:0-247,uc009wld.2:0-247,uc009wlb.1:0-539,uc001esl.3:0-247	uc001emi.3:0-505	BC110832,LOC728855	BC065231	Intrachromosomal_Complex	-4571166	2	0	2	0.25	1.0		C3382841,C0181713,C3382868,C3382853,C0181726
chrM	12338	14645	chrM	8664	9990	CLUSTER56	2	+	+	uc004cox.3:0-2307	uc011mfi.1:0-1326	MTND5	OK/SW-cl.16	Intrachromosomal_Complex	-2347	2	0	2	1.0	1.0		C3238783
chr9	19378359	19379616	chrM	1709	4262	CLUSTER58	2	-	+	uc003znw.1:0-496	uc004cos.3:0-2553	RPS6	TVAS5	Interchromosomal	None	2	0	2	1.0	1.0		C3024606
chr1	144520774	144520993	chr1	145004781	145005286	CLUSTER60	2	-	+	uc001ela.3:0-219,uc001eky.3:0-219,uc001ekz.3:0-183	uc001emi.3:0-505	LOC728875,BC021732	BC065231	Intrachromsomal_Diverging	483787	2	0	2	0.285714285714	1.0		C0178088,C0178093,C0178098
chrM	237	368	chr9	100777646	100778222	CLUSTER61	2	-	+	uc004coq.3:0-131	uc004aya.2:1037-1613	DQ582201	ANP32B	Interchromosomal	None	2	0	2	1.0	0.0137931034483		C3157033
chr10	38691497	38691780	chr7	55840872	55841374	CLUSTER63	2	-	+	uc009xmd.1:0-283	uc003tqy.2:0-502	CDC10L	CO9	Interchromosomal	None	2	0	2	1.0	1.0		C3408717
chr17	60536019	60637487	chr11	141453	169052	CLUSTER65	2	+	-	uc010ddp.2:0-1098,uc002izz.3:0-1101,uc010wpd.1:0-747,uc002jaa.3:0-1005,uc002izx.3:0-1086	uc001lnz.2:133-1430	TLK1,TLK2	AL137655	Interchromosomal	None	2	0	2	0.125	0.4		C1520320,C1520355,C4250777,C3662333,C1520334
chr19	11071598	11152236	chrM	1709	4262	CLUSTER70	2	+	+	uc010dxp.2:0-4783,uc010dxo.2:0-4803,uc002mqf.3:0-4707,uc010dxq.2:0-4352,uc002mqj.3:0-4361	uc004cos.3:0-2553	SMARCA4	TVAS5	Interchromosomal	None	2	0	2	0.0307692307692	1.0		C3687618,C1671350,C3687187,C1672090,C3686758
chr7	54825188	54826939	chrM	1709	4262	CLUSTER73	2	-	+	uc003tqg.2:0-188	uc004cos.3:0-2553	SEC61G	TVAS5	Interchromosomal	None	2	0	2	0.0512820512821	1.0		C2865435
chr17	60536019	60637487	chr1	700237	709660	CLUSTER77	2	+	-	uc010ddp.2:0-1098,uc002izz.3:0-1101,uc010wpd.1:0-747,uc002jaa.3:0-1005,uc002izx.3:0-1086	uc001abo.2:343-1316	TLK1,TLK2	BC006361	Interchromosomal	None	2	0	2	0.125	1.0		C3662328,C1520330,C1520351,C1520317,C4250774
