#chrom5p	start5p	end5p	chrom3p	start3p	end3p	chimera_cluster_id	score	strand5p	strand3p	transcript_ids_5p	transcript_ids_3p	genes5p	genes3p	type	distance	total_frags	spanning_frags	unique_alignment_positions	isoform_fraction_5p	isoform_fraction_3p	breakpoint_spanning_reads	chimera_ids
chr17	35479453	35656692	chr17	37366790	37374426	CLUSTER114	58	-	-	uc010wdc.1:0-937,uc002hno.2:0-6786,uc002hnn.2:0-7324,uc010cuy.2:0-2042,uc002hnl.2:0-6190,uc010cuy.2:0-1945,uc002hno.2:0-6650,uc002hnl.2:0-6423,uc002hnn.2:0-7227,uc002hnk.2:0-6301,uc010cuy.2:0-2178,uc002hno.2:0-6553,uc002hnk.2:0-6534,uc002hnm.2:0-6353,uc002hnl.2:0-6287,uc002hnk.2:0-6398,uc010wdc.1:0-840,uc002hnm.2:0-6120,uc010wdc.1:0-1073,uc002hnm.2:0-6217,uc002hnn.2:0-7460	uc010cvt.2:309-3007,uc002hrs.2:309-3209	ACACA	STAC2	Intrachromosomal_Complex	1710097	58	17	56	0.285714285714	0.983050847458	>4778959/1;pos=313;strand=-,AACCTGGATTCTGAAGCCAAGCTCCAGCGATTCAAGCGCTCCCTCTCCCT,>7409024/1;pos=318;strand=-,GGATTCTGAAGCCAAGCTCCAGCGATTCAAGCGCTCCCTCTCCCTCAAGA,>2135047/1;pos=310;strand=-,GCAAACCTGGATTCTGAAGCCAAGCTCCAGCGATTCAAGCGCTCCCTCTC,>7735176/2;pos=311;strand=-,CAAACCTGGATTCTGAAGCCAAGCTCCAGCGATTCAAGCGCTCCCTCTCC,>2042989/2;pos=305;strand=-,ATCCAGCAAACCTGGATTCTGAAGCCAAGCTCCAGCGATTCAAGCGCTCC,>3883970/1;pos=316;strand=-,CTGGATTCTGAAGCCAAGCTCCAGCGATTCAAGCGCTCCCTCTCCCTCAA,>3525144/1;pos=6353;strand=+,ACTAAGTATCCCAGCTGATCCAGCAAACCTGGATTCTGAAGCCAAGCTCC,>6511147/1;pos=6354;strand=+,CTAAGTATCCCAGCTGATCCAGCAAACCTGGATTCTGAAGCCAAGCTCCA,>911375/2;pos=6363;strand=+,CCAGCTGATCCAGCAAACCTGGATTCTGAAGCCAAGCTCCAGCGATTCAA,>754507/2;pos=6368;strand=+,TGATCCAGCAAACCTGGATTCTGAAGCCAAGCTCCAGCGATTCAAGCGCT,>5105336/1;pos=6371;strand=+,TCCAGCAAACCTGGATTCTGAAGCCAAGCTCCAGCGATTCAAGCGCTCCC,>7406377/2;pos=6377;strand=+,AAACCTGGATTCTGAAGCCAAGCTCCAGCGATTCAAGCGCTCCCTCTCCC	C2780169,C1037330,C1037332,C1037329,C3222219,C1039233,C1039232,C1039230,C2779811,C2779810,C2779812,C3222365,C1032518,C1031675,C1031673,C1031672,C3222220,C3222221,C1040080,C1036291,C1038177,C1035446,C1035447,C1035443,C1033558,C1033559,C1034403,C1033557
chr17	48943419	48943706	chr17	35874901	35880751	CLUSTER75	29	-	-	uc010wmy.1:0-287	uc010wde.1:3695-8004,uc002hoc.2:3623-7932,uc010wdg.1:3131-7551,uc010wdf.1:3515-7935,uc010wdg.1:3242-7551,uc002hoa.2:3749-8169,uc002hoc.2:3512-7932,uc002hoa.2:3860-8169,uc010wdf.1:3626-7935	TOB1	SYNRG	Intrachromosomal	-12970855	29	14	29	0.345238095238	0.617021276596	>3973577/1;pos=3766;strand=-,AGCAGCCCCCAGATGAAAACTCGCTGGATTTTTCCTCCTGTATGTTACGG,>6975648/2;pos=3765;strand=-,AAGCAGCCCCCAGATGAAAACTCGCTGGATTTTTCCTCCTGTATGTTACG,>128169/1;pos=3764;strand=-,GAAGCAGCCCCCAGATGAAAACTCGCTGGATTTTTCCTCCTGTATGTTAC,>6337461/1;pos=3755;strand=-,AGCCGCCCCGAAGCAGCCCCCAGATGAAAACTCGCTGGATTTTTCCTCCT,>1564579/1;pos=265;strand=+,TCCAAGCCGCCCCGAAGCAGCCCCCAGATGAAAACTCGCTGGATTTTTCC,>5601788/2;pos=266;strand=+,CCAAGCCGCCCCGAAGCAGCCCCCAGATGAAAACTCGCTGGATTTTTCCT,>3442084/1;pos=268;strand=+,AAGCCGCCCCGAAGCAGCCCCCAGATGAAAACTCGCTGGATTTTTCCTCC,>7272908/2;pos=3769;strand=-,AGCCCCCAGATGAAAACTCGCTGGATTTTTCCTCCTGTATGTTACGGCCC	C3256973,C3256979,C3256971,C3257034,C3257037,C3257036,C3257027,C3257033,C3256978
chr17	57970443	57970686	chr17	47007461	47021337	CLUSTER20	28	+	-	uc010ddj.1:0-243,uc010won.1:0-243,uc010wom.1:0-243,uc002ixy.2:0-243	uc002iok.2:112-1207,uc002ioj.2:112-1210,uc002iok.2:163-1207,uc002ioj.2:163-1210	RPS6KB1	SNF8	Intrachromsomal_Diverging	-10948288	28	11	28	0.4375	0.106463878327	>7692713/1;pos=123;strand=-,AGCTGGAGGAGGGGGCCAAGTATAAGGAGCGAGGGACGGTCTTGGCTGAG,>4235698/1;pos=126;strand=-,TGGAGGAGGGGGCCAAGTATAAGGAGCGAGGGACGGTCTTGGCTGAGGAC,>443453/1;pos=201;strand=+,CCAGCCAGAGGACGCGGGCTCTGAGGATGAGCTGGAGGAGGGGGCCAAGT,>6106337/1;pos=205;strand=+,CCAGAGGACGCGGGCTCTGAGGATGAGCTGGAGGAGGGGGCCAAGTATAA,>7389525/1;pos=211;strand=+,GACGCGGGCTCTGAGGATGAGCTGGAGGAGGGGGCCAAGTATAAGGAGCG,>5852826/2;pos=212;strand=+,ACGCGGGCTCTGAGGATGAGCTGGAGGAGGGGGCCAAGTATAAGGAGCGA,>6079923/1;pos=216;strand=+,GGGCTCTGAGGATGAGCTGGAGGAGGGGGCCAAGTATAAGGAGCGAGGGA,>5959075/2;pos=222;strand=+,TGAGGATGAGCTGGAGGAGGGGGCCAAGTATAAGGAGCGAGGGACGGTCT,>140752/1;pos=106;strand=-,CGCGGGCTCTGAGGATGAGCTGGAGGAGGGGGCCAAGTATAAGGAGCGAG,>5126795/2;pos=117;strand=-,AGGATGAGCTGGAGGAGGGGGCCAAGTATAAGGAGCGAGGGACGGTCTTG	C3259745,C3259747,C3259741,C3259743,C3259788,C3259793,C1218570,C1218565,C2823162,C2823157
chr20	56964245	56964573	chr17	37921201	37934020	CLUSTER26	28	+	-	uc002xzb.2:0-328	uc010cwd.2:225-2004,uc002hsu.2:654-2433,uc010wel.1:341-2003,uc010cwg.2:225-1770,uc002hsx.2:486-2265,uc002hsz.2:486-2148,uc002htd.2:552-2331,uc010cwh.2:393-2172	VAP-B	ZNFN1A3,IKZF3	Interchromosomal	None	28	7	28	0.282828282828	0.965517241379	>2053965/1;pos=490;strand=-,AGCACGAGCTCAAATTCCGAGCAAGTGCGGAGGCAAGACACATCAAAGCA,>3220095/2;pos=492;strand=-,CACGAGCTCAAATTCCGAGCAAGTGCGGAGGCAAGACACATCAAAGCAGA,>906927/2;pos=487;strand=-,CGCAGCACGAGCTCAAATTCCGAGCAAGTGCGGAGGCAAGACACATCAAA,>1203103/1;pos=287;strand=+,AGGTCCTGAGCCTCGAGCCGCAGCACGAGCTCAAATTCCGAGCAAGTGCG,>682249/1;pos=290;strand=+,TCCTGAGCCTCGAGCCGCAGCACGAGCTCAAATTCCGAGCAAGTGCGGAG,>2304243/1;pos=303;strand=+,GCCGCAGCACGAGCTCAAATTCCGAGCAAGTGCGGAGGCAAGACACATCA	C1696105,C1696115,C1696345,C1696348,C1696119,C1696370,C1696337,C1696131
chr20	45852970	45867893	chr20	34078463	34099802	CLUSTER25	25	-	+	uc002xtf.1:0-3476,uc002xsx.1:0-3234,uc002xtf.1:0-3315,uc002xsr.1:0-844,uc002xtb.1:0-3338,uc002xsv.1:0-3025,uc002xtb.1:0-3177,uc002xte.1:0-3248,uc010zya.1:0-3547,uc002xsy.1:0-3189,uc002xsx.1:0-3395,uc010ghr.1:0-2947,uc002xss.2:0-3439,uc002xte.1:0-3409,uc002xsv.1:0-3186,uc002xsz.1:0-3118,uc002xst.1:0-3048,uc002xsr.1:0-1005,uc010zxz.1:0-2859,uc010zxy.1:0-3358,uc002xst.1:0-2887,uc002xsw.1:0-3234,uc002xsu.1:0-2860,uc010zxy.1:0-3519,uc002xsy.1:0-3028,uc002xtd.1:0-3263,uc002xta.1:0-3610,uc002xsz.1:0-2957,uc002xss.2:0-3600,uc002xtc.1:0-3177,uc010ghq.1:0-2119,uc002xtd.1:0-3102,uc002xtc.1:0-3338,uc010zxz.1:0-3020,uc010zya.1:0-3386,uc010ghq.1:0-2280,uc002xta.1:0-3449,uc002xsw.1:0-3395,uc010ghr.1:0-3108,uc002xsu.1:0-3021	uc010zve.1:2983-7904,uc002xcm.2:3425-8346,uc010zve.1:2815-7904,uc002xcm.2:3257-8346	ZMYND8,KIAA1125	CEP250	Intrachromosomal_Converging	-11738578	25	5	25	0.378787878788	0.806451612903	>2909198/2;pos=800;strand=+,AGCAAGCCCACTGGCCTGAGCACATGAAGTCCTGCACCCAGTCAGGAGAA,>6332634/1;pos=803;strand=+,AAGCCCACTGGCCTGAGCACATGAAGTCCTGCACCCAGTCAGGAGAAGGA,>3163416/1;pos=805;strand=+,GCCCACTGGCCTGAGCACATGAAGTCCTGCACCCAGTCAGGAGAAGGAGC,>6678328/1;pos=806;strand=+,CCCACTGGCCTGAGCACATGAAGTCCTGCACCCAGTCAGGAGAAGGAGCG,>2668931/1;pos=807;strand=+,CCACTGGCCTGAGCACATGAAGTCCTGCACCCAGTCAGGAGAAGGAGCGC	C3343397,C3343398,C3343399,C1651550,C2899035,C2899036,C2899037,C1636078,C1636079,C1636077,C1661449,C1661448,C1669859,C2898790,C3343860,C2898340,C1663856,C1663854,C1663855,C1635608,C1635609,C1666544,C1666543,C1666542,C1667083,C1667085,C1667084,C1664323,C1656270,C1643153,C1643155,C1643154,C2899253,C2899254,C2899255,C1635610,C2898338,C2898339,C3346061,C1661917,C1661919,C1661918,C2898789,C1656269,C1656268,C2898788,C1653781,C1653780,C1653782,C1669861,C1633441,C1640691,C1633443,C3341445,C1651009,C1641221,C1641223,C1641222,C1643621,C1643620,C3346603,C3346602,C3346604,C1643619,C1669319,C1669318,C1633839,C1633838,C1651011,C1651010,C1654319,C1654318,C1656737,C1656736,C1656735,C1648327,C1648326,C1648325,C1664325,C1664324,C3343859,C3343858,C1640692,C1633442,C3341446,C3341447,C1669320,C1640690,C1633840,C1651549,C1651548,C1654320,C1669860,C1648794,C1648795,C1648793,C1638010,C1638011,C1659497,C1659496,C1659495,C3340908,C1645835,C1645836,C1645837,C3340906,C3340907,C1646376,C1646377,C1646375,C1638009,C1661450,C1658955,C1658954,C1658956,C3346063,C3346062,C1638475,C1638476,C1638477
chrM	12338	14645	chrM	8664	9990	CLUSTER59	10	+	+	uc004cox.3:0-2307	uc011mfi.1:0-1326	MTND5	OK/SW-cl.16	Intrachromosomal_Complex	-2347	10	0	10	1.0	1.0		C2543230
chr17	37607291	37607527	chr17	53218671	53241449	CLUSTER76	9	-	+	uc002hru.2:0-236,uc010wee.1:0-236,uc002hrv.3:0-236	uc010dcd.1:1630-5979,uc002iuf.1:1754-6045,uc002iuf.1:1696-6045,uc010dcd.1:1688-5979	MED1	STXBP4	Intrachromsomal_Diverging	15438598	9	3	9	0.0676691729323	0.642857142857	>6734500/2;pos=1706;strand=-,AGGGGGAAACCGAGGGTTTACCTTATGGGTGGGAGGAAGCTTACACAGCA,>2692293/2;pos=1713;strand=-,AACCGAGGGTTTACCTTATGGGTGGGAGGAAGCTTACACAGCAGATGGAA	C1074979,C1074981,C1075596,C1075594,C1075930,C1075932,C3231517,C3231515,C1075049,C3231850,C1075047,C3231848
chrM	14762	15888	chrM	1709	4262	CLUSTER66	8	+	+	uc004coy.2:0-1126	uc004cos.3:0-2553	cytochrome_b	TVAS5	Intrachromosomal_Complex	-10499	8	0	8	1.0	1.0		C2545618
chrM	10579	12138	chrM	1709	4262	CLUSTER83	8	+	+	uc004cov.3:0-1559	uc004cos.3:0-2553	STRF6	TVAS5	Intrachromosomal_Complex	-6316	8	0	8	1.0	1.0		C2532935
chrM	12338	14645	chrM	1709	4262	CLUSTER103	8	+	+	uc004cox.3:0-2307	uc004cos.3:0-2553	MTND5	TVAS5	Intrachromosomal_Complex	-8075	8	0	8	1.0	1.0		C2540577
chr7	45798673	45808617	chr7	55840872	55841374	CLUSTER62	7	-	+	uc003tnf.3:0-358,uc003tnh.2:0-358,uc003tnh.2:0-459,uc003tnf.3:0-459	uc003tqy.2:0-502	SEPT13	CO9	Intrachromsomal_Diverging	10032254	7	0	7	0.4375	1.0		C2240632,C2240615,C2240616,C2240633
chr20	56884771	56886178	chr19	17256207	17324103	CLUSTER48	6	+	+	uc002xyz.2:0-377	uc002nfi.2:992-7621,uc010eak.2:992-7609,uc002nfj.1:898-5939	RAB22A	MYO9B	Interchromosomal	None	6	1	6	0.089552238806	0.428571428571	>7705638/1;pos=344;strand=+,ACAGTTTTGATCCAAACATCAACCCAACAATAGGGCTTTTGGAAATGCCA	C1695611,C1695505,C1695507
chr4	77507293	77507622	chr4	77631309	77704403	CLUSTER0	6	+	+	uc011cby.1:0-447,uc011cby.1:0-329	uc011cbz.1:245-3878,uc011cbx.1:1276-11016,uc003hkf.1:410-3707,uc011cbx.1:1408-11016,uc011cbz.1:377-3878	AK097800	SHROOM3,hShrmL	Overlapping_Complex	0	6	0	6	0.75	0.857142857143		C3384181,C3384173,C3384177,C3384174,C3384183,C3384179,C3384178,C3384180
chr17	57232317	57232800	chr17	34851600	34863763	CLUSTER32	6	-	-	uc002ixd.2:0-308,uc002ixe.2:0-308,uc010dde.1:0-483	uc010wcy.1:2345-4399,uc010wcz.1:2821-3150,uc010cuu.2:2100-5420,uc010wcz.1:2707-3150,uc010cuu.2:1978-5420,uc010wcz.1:2585-3150,uc010wcy.1:2459-4399,uc010cuu.2:2214-5420,uc010wcy.1:2223-4399	SKA2,FAM33A	MYO19	Intrachromosomal	-22296268	6	0	6	0.4	0.117647058824		C2823152,C2823151,C2823147,C2823150,C2823145,C2823153,C1206789,C1206807,C1206811,C1206803,C2823146,C1206793,C2823149,C2823148,C1206785
chr2	85804648	85806290	chr2	85818848	85820511	CLUSTER28	5	+	+	uc002spt.3:0-283,uc002spt.3:0-740	uc002spu.1:86-664	VAMP8	VAMP5	Read_Through	2375	5	1	5	0.0649350649351	1.0	>5647344/2;pos=91;strand=-,CAGAGGATCTGGAAGCCACAGCAGGAATAGAGTTGGAGCGGTGCCAGCAG	C1511534,C1511532
chrM	1709	4262	chr1	569327	570349	CLUSTER73	5	+	+	uc004cos.3:0-2553	uc001abc.2:0-1022	TVAS5	CR615613	Interchromosomal	None	5	1	5	1.0	1.0	>6368906/2;pos=41;strand=+,CCGAAACCTCCTCGGACTCCTGCCTCACTCATTTACACCAACCACCCAAC	C2495940
chr3	33055548	33138314	chr3	32483332	32496333	CLUSTER78	5	-	+	uc003cfh.1:0-1762,uc003cfi.1:0-1850,uc011axk.1:0-1994,uc003cfj.1:0-1457	uc003cey.1:395-1350	GLB1	CMTM7	Intrachromosomal_Converging	-541766	5	1	5	0.416666666667	1.0	>7634378/1;pos=401;strand=-,GTTTCCTGGATGGACCAAGGTCACCCTGCTGATTGCCTTCATCTGTGTGC	C1818144,C3368300,C1818140,C1818142
chr4	76649460	76649795	chr4	76567955	76587233	CLUSTER21	5	-	-	uc010iiy.2:0-335	uc003his.2:276-4407,uc003hit.2:276-4308	AK311578	G3BP2	Read_Through	-50030	5	0	5	0.5	0.0617283950617		C2937935,C2937931
chr20	57226328	57227194	chr20	55929768	55953518	CLUSTER33	5	+	+	uc002xzm.2:0-866	uc002xyh.2:88-1564,uc002xyg.2:334-1810,uc002xyi.2:358-1834,uc010gis.1:334-1885,uc002xyh.2:185-1564,uc002xyg.2:431-1810,uc010git.1:431-1911,uc002xyi.2:455-1834,uc010git.1:334-1911	STX16	RAE1	Intrachromosomal_Complex	-1272809	5	0	5	0.0588235294118	0.021645021645		C1697525,C1697527,C1697526,C1697529,C1697528,C1697530,C1697547,C1697549,C1697548
chr17	37793412	37793484	chr20	53259997	53267709	CLUSTER65	4	+	+	uc010weg.1:0-72,uc002hse.2:0-72,uc010wei.1:0-72,uc010weh.1:0-72,uc002hsd.2:0-72	uc002xwy.2:955-1831,uc002xwz.2:890-1766,uc010gin.2:856-1732	STARD3	DOK5	Interchromosomal	None	4	1	4	0.0192307692308	1.0	>5166642/2;pos=39;strand=+,GGGAAGAGCCGGGGCCGTGGCTGACATGGAGCAGCTCCAGATGAAGATGA	C3233749,C3235085,C3232764,C3234485,C3234484,C1077082,C1077083,C3233185,C1078996,C3232612,C3232613,C3233184,C1077683,C1078432,C1078431
chr20	61569148	61569274	chr20	36611425	36634799	CLUSTER91	4	-	-	uc002ydu.1:0-126,uc002yds.1:0-126,uc002ydx.1:0-126	uc002xhl.2:2511-3911,uc002xhl.2:168-3911,uc002xhm.2:2371-3771	DIDO1	KIAA0406	Intrachromosomal	-24847256	4	1	4	0.363636363636	0.235294117647	>7756334/1;pos=84;strand=+,CTGGAACCGGGATGGCGACGTCTACACTGAGTCGGAGGCGAAGCCCAGTG	C1705495,C1705494,C1705702,C1705628,C1705627,C1705498,C1705631,C1705699,C1705698
chr1	162039581	162335359	chr1	162351520	162356608	CLUSTER22	4	+	+	uc009wut.1:0-2586,uc001gbw.2:0-1476,uc001gbv.2:0-1491,uc010pks.1:0-1589	uc001gby.2:0-4125	KIAA0464,NOS1AP	C1orf226	Read_Through	11706	4	0	4	0.285714285714	1.0		C2630631,C3059037,C0170979,C0170941
chr4	159091916	159092632	chr4	159119940	159123393	CLUSTER41	4	+	+	uc003ipt.1:0-716	uc003ipu.1:240-1551,uc003ipv.1:815-2723	AK126266	AK096792,AK126266	Read_Through	771	4	0	4	1.0	0.666666666667		C1948155,C1948156
chr13	113951469	113951810	chr13	113718618	113752863	CLUSTER44	4	+	+	uc010tka.1:0-341,uc001vtm.1:0-341	uc001vsr.2:828-5405,uc001vss.3:640-3409,uc010tjs.1:640-5217,uc001vsq.2:682-5446,uc001vst.1:445-2550,uc001vsu.2:682-5259,uc010tjr.1:648-5225	LAMP1	MCF2L	Intrachromosomal_Complex	-198605	4	0	4	0.0754716981132	0.153846153846		C3151020,C3151008,C0656725,C3151011,C0656727,C3151013,C0656736,C0656720,C0656734,C0656722,C3151022,C3151005,C3151006,C0656719
chr12	124824552	125020157	chr8	22463598	22477975	CLUSTER80	4	-	+	uc010taz.1:0-5823,uc010tay.1:0-5871	uc003xch.2:99-3688,uc003xci.2:381-3970,uc003xch.2:195-3688,uc003xci.2:477-3970	NCOR2	KIAA1967	Interchromosomal	None	4	0	4	0.16	0.0571428571429		C3146951,C3146950,C3146953,C3145954,C3145955,C3145956,C3146949,C3145952
chrM	14762	15888	chrM	8664	9990	CLUSTER108	4	+	+	uc004coy.2:0-1126	uc011mfi.1:0-1326	cytochrome_b	OK/SW-cl.16	Intrachromosomal_Complex	-4771	4	0	4	1.0	1.0		C2546633
chr7	64126511	64139714	chr7	64144713	64147263	CLUSTER46	3	+	+	uc003tte.2:0-312	uc003ttf.2:209-2759	ZNF107	BC053669	Overlapping_Same	0	3	2	3	0.6	0.272727272727	>830884/2;pos=219;strand=-,TCTCCCTTCGGATAGATACCCAGCCATATGAGGACACTCTGGCCAGACAG,>3667347/2;pos=287;strand=+,AAAGCCCCGCCTCTGCCTTCGGATAGATACCCAGCCATATGAGGACACTC	C2242265
chr20	62496590	62500794	chr20	62559688	62565394	CLUSTER51	3	+	+	uc002ygz.2:0-293,uc002ygy.2:0-293,uc002yha.2:0-293,uc002yhd.2:0-293,uc002yhb.2:0-293,uc002yhc.2:0-293,uc011abl.1:0-224	uc002yhh.2:997-4033,uc002yhf.2:159-3239,uc002yhf.2:277-3239,uc002yhg.1:159-1600,uc002yhh.2:879-4033,uc002yhg.1:277-1600	TPD52L2	DNAJC5,FLJ00118	Read_Through	3629	3	2	3	0.0394736842105	0.15	>1854116/2;pos=173;strand=-,AGCTTACCAAGAATAGCCTAACATGGCAGACCAGAGACAGCGCTCACTGT,>272773/1;pos=254;strand=+,AGAGGCTGAGGAGGAGGAGCTCAGGGCTGAGCTTACCAAGAATAGCCTAA	C1712082,C1711479,C1712087,C1712084,C1712085,C1711601,C1711600,C1711603,C1711604,C1711606,C1711727,C1711724,C1711725,C1711722,C1711721,C1711967,C1711477,C1711964,C1711966,C1711848,C1711961,C1711963,C1711843,C1711842,C1711840,C1711846,C1711845,C3351598,C1711483,C1711482,C1712088,C1711480,C1712090,C1711485,C1711598,C1711719,C1711969
chr17	60129898	60142643	chr17	59469338	59470198	CLUSTER97	3	-	+	uc002izo.2:0-546	uc002iyu.3:2702-3562,uc002iyw.3:2768-3719,uc002izd.3:176-1036,uc002iyy.3:2094-2954,uc002iyv.3:2747-3607,uc002izc.3:1239-2099	MED13	BCAS3	Intrachromosomal_Converging	-549768	3	2	3	0.25	0.142857142857	>5843529/2;pos=503;strand=+,TTTGTAAAGCCTTATGAAAAAGATGAAAAACCTATAAATAAAAGAACTTC,>6255657/2;pos=522;strand=+,AAGATGAAAAACCTATAAATAAAAGAACTTCAGCGAGAGGGAAGCATCGA	C1218962,C1218963,C1218949,C1218955,C1218950,C1218952
chr11	1775033	1785222	chr11	1756060	1769349	CLUSTER34	3	-	-	uc009yda.1:0-1200,uc001luc.1:0-1203	uc001lub.1:334-1386	CTSD	CR626060	Read_Through	-2174	3	1	3	0.0134529147982	0.6	>1451973/1;pos=1164;strand=+,CAAAGGCTACAAGCTGTCCCCAGAGGACTACACGCTCAAGGCCCAGGGCC	C0288361,C2653307
chr20	57226328	57248767	chr20	57266780	57291367	CLUSTER79	3	+	+	uc002xzi.2:0-1607,uc010zzq.1:0-805,uc002xzk.2:0-1556,uc002xzm.2:0-1595,uc002xzl.2:0-1393,uc002xzj.2:0-1544	uc002xzn.2:0-2535	STX16	NPEPL1	Read_Through	12199	3	1	3	0.0535714285714	1.0	>783463/1;pos=4;strand=-,GGTTTGAAACAGCTTCACAAGGCTGGTTATGAAGAAGAAACTCAAAATAA	C1697227,C1696921,C1697069,C3349017,C1697531,C1697385
chr11	50257351	50257623	chr7	55840872	55841374	CLUSTER96	4	-	+	uc001nhd.2:0-272	uc003tqy.2:0-502	LOC441601	CO9	Interchromosomal	None	4	0	3	1.0	1.0		C0321978
chr7	77325213	77326662	chr7	77313168	77314643	CLUSTER1	3	-	-	uc003ugj.1:0-1449	uc003ugk.3:125-525,uc003ugk.3:0-525	BC037783	AF290475	Overlapping_Complex	0	3	0	3	1.0	1.0		C2254575,C2254576
chr5	85578262	85589152	chr10	73576056	73580092	CLUSTER2	3	+	-	uc003kiq.2:0-1398	uc001jsl.2:170-1977	NBPF22P	PSAP	Interchromosomal	None	3	0	3	1.0	0.0115384615385		C1994788
chr19	18654292	18654387	chr17	57987923	58027784	CLUSTER5	3	-	+	uc002njl.1:0-95,uc002njm.1:0-95,uc010ebr.1:0-95	uc010won.1:244-5246,uc010ddj.1:244-2042,uc002ixy.2:244-5315	FKBP8	RPS6KB1	Interchromosomal	None	3	0	3	0.157894736842	0.0508474576271		C1390321,C1390351,C1390329,C1390334,C2858122,C2858117,C2858110,C1390366,C1390361
chr19	39971052	39976447	chrM	1709	4262	CLUSTER9	3	+	+	uc002olu.1:0-933	uc004cos.3:0-2553	TIMM50	TVAS5	Interchromosomal	None	3	0	3	0.0352941176471	1.0		C1413912
chrX	2609228	2637746	chrM	1709	4262	CLUSTER14	3	+	+	uc004cqn.2:0-366,uc004cqo.2:0-366,uc010nda.2:0-318	uc004cos.3:0-2553	CD99	TVAS5	Interchromosomal	None	3	0	3	0.0101694915254	1.0		C2548854,C2548517,C3008758
chrM	7587	8295	chrM	1709	4262	CLUSTER24	3	+	+	uc004cou.3:0-708	uc004cos.3:0-2553	X64709	TVAS5	Intrachromosomal_Complex	-3324	3	0	3	1.0	1.0		C2527556
chr20	42939616	42939889	chr20	33890383	33902568	CLUSTER29	3	-	-	uc002xlr.1:0-273	uc002xce.2:559-2240,uc010zuy.1:453-2134,uc002xcg.2:690-2371,uc010zuz.1:200-1881,uc002xcd.2:640-2321,uc010zvb.1:436-2117,uc002xcf.2:363-2044	FITM2	MST118,UQCC	Intrachromosomal	-8935363	3	0	3	0.0789473684211	0.0294117647059		C1626039,C1626038,C1626046,C1626044,C1626043,C1626040,C1626041
chr22	29702997	29703143	chr17	48211102	48227383	CLUSTER35	3	+	-	uc003afc.1:0-146,uc010gvm.1:0-146,uc003afb.1:0-146,uc003afd.1:0-146	uc002iqh.3:474-4026	GAS2L1	PPP1R9B	Interchromosomal	None	3	0	3	0.5	0.166666666667		C1750197,C2913378,C1750090,C1750328
chrM	15999	16571	chrM	8664	9990	CLUSTER37	3	+	+	uc004coz.1:0-572	uc011mfi.1:0-1326	AF079515	OK/SW-cl.16	Intrachromosomal_Complex	-6008	3	0	3	1.0	1.0		C2547164
chrY	2559228	2587746	chrM	1709	4262	CLUSTER39	3	+	+	uc010nwa.2:0-318,uc004fqa.2:0-366,uc004fqb.2:0-366	uc004cos.3:0-2553	CD99	TVAS5	Interchromosomal	None	3	0	3	0.0101694915254	1.0		C2603134,C3017604,C2603471
chrM	5855	7427	chrM	1709	4262	CLUSTER49	3	+	+	uc011mfh.1:0-1572	uc004cos.3:0-2553	BC018860	TVAS5	Adjacent_Complex	-1592	3	0	3	1.0	1.0		C3793611
chr1	108769301	108786703	chr10	73576056	73580092	CLUSTER52	3	-	-	uc001dvo.2:0-1730,uc009weo.2:0-2092	uc001jsl.2:170-1977	NBPF6,NBPF4	PSAP	Interchromosomal	None	3	0	3	1.0	0.0115384615385		C0109529,C2621348
chr19	28283908	28284848	chr19	28221181	28237138	CLUSTER53	3	-	-	uc002nrx.2:0-641	uc002nrw.1:0-2479	LOC148189	AK094188	Read_Through	-44263	3	0	3	1.0	1.0		C1394480
chr1	108992904	109010287	chr10	73576056	73580092	CLUSTER64	3	+	-	uc009wep.2:0-2179,uc009weq.2:0-2092	uc001jsl.2:170-1977	NBPF6	PSAP	Interchromosomal	None	3	0	3	1.0	0.0115384615385		C2621360,C2621353
chrM	10579	12138	chrM	8664	9990	CLUSTER72	3	+	+	uc004cov.3:0-1559	uc011mfi.1:0-1326	STRF6	OK/SW-cl.16	Adjacent_Complex	-588	3	0	3	1.0	1.0		C2534813
chr19	10828755	10939944	chrM	1709	4262	CLUSTER86	3	+	+	uc002mpu.1:0-2442,uc002mps.1:0-2454,uc002mpt.1:0-2454,uc002mpv.1:0-2442,uc010dxl.1:0-2454	uc004cos.3:0-2553	DNM2	TVAS5	Interchromosomal	None	3	0	3	0.0405405405405	1.0		C1358326,C2842497,C1357947,C1358074,C1358200
chr9	134305477	134357195	chr1	160139463	160156766	CLUSTER113	3	+	+	uc004can.3:0-5037	uc001fvg.2:461-3914	BAT2L	ATP1A4	Interchromosomal	None	3	0	3	0.0652173913043	1.0		C2458184
chr17	48227404	48227877	chr22	29702997	29708774	CLUSTER115	3	-	+	uc002iqh.3:0-473	uc003afd.1:0-2498,uc003afb.1:0-2961,uc010gvm.1:0-1814,uc003afc.1:0-2524,uc003afa.1:0-2529	PPP1R9B	GAS2L1	Interchromosomal	None	3	0	3	0.1875	1.0		C1161487,C1161490,C1162126,C1161488,C1161489
chr17	37006352	37010053	chr17	37070578	37078022	CLUSTER12	67	-	+	uc002hqy.1:0-2820	uc010cvq.2:858-4277,uc002hra.2:688-4107,uc010wdz.1:603-4022	LOC222901	LASP1	Adjacent_Diverging	16058	67	67	2	1.0	0.0370165745856	>2141151/2;pos=4;strand=-,CAGCATTGCATGATTCTCCAGTANATTTGTAAAAAATAAAAAAAAACTAA,>5925527/2;pos=4;strand=-,CAGCATTGCATGATTCTCCAGTATATGTGTAAAAAATAAAAAAAAACTAA,>1015826/2;pos=5;strand=-,AGCATTGCATGATTCTCCAGTATATTTGTATAAAATAAAAAAAAACTAAA,>1239555/1;pos=5;strand=-,AGCATTGCATGANTCTCCAGTATATTTGTAAAAAATAAAAAAAAACTAAA,>1245697/1;pos=5;strand=-,AGCGTTGCATGATTCTCCAGTATATTTGTAAAAAATAAAAAAAAACTAAA,>150938/2;pos=5;strand=-,AGCATTGCATGATTCTCCAGTATATTTGCAAAAAATAAAAAAAAACTAAA,>1683432/2;pos=5;strand=-,AGCATTGCATGATTCTCCTGTATATTTGTAAAAAATAAAAAAAAACTAAA,>1921640/1;pos=5;strand=-,AGCANTGCATGATTCTCCAGTATATTTGTAAAAAATAAAAAAAAACTAAA,>2203816/2;pos=5;strand=-,ANCATTGCATGATTCTCCAGTATATTTGTAAAAAATAAAAAAAAACTAAA,>2304463/1;pos=5;strand=-,AGCATTGCATGATTCTCCAGGATATTTGTAAAAAATAAAAAAAAACTAAA,>2346863/2;pos=5;strand=-,AGCATTGCATAATTCTCCAGTATATTTGTAAAAAATAAAAAAAAACTAAA,>2417183/2;pos=5;strand=-,AGCATTGCATGATTCTCCAGTATATTTGTAAAAAATAAAGAAAAACTAAA,>2429430/1;pos=5;strand=-,AGCATTACATGATTCTCCAGTATATTTGTAAAAAATAAAAAAAAACTAAA,>2656362/2;pos=5;strand=-,AGCATTGCATGATTCTCCAGTATATCTGTAAAAAATAAAAAAAAACTAAA,>2662655/2;pos=5;strand=-,AGCATTGCATGATTCTCCAGTATATTTGTAAAAAATAAAAAAAAGCTAAA,>2723696/2;pos=5;strand=-,AGCATTGCATGATTCTCCAGTATATTTGTAAAAAATAAAAAAAACCTAAA,>2753589/2;pos=5;strand=-,AGCATTGCATGATTCTCCAATATATTTGTAAAAAATAAAAAAAAACTAAA,>2892289/2;pos=5;strand=-,AGCATNGCATGATTCTCCAGTATATTTGTAAAAAATAAAAAAAAACTAAA,>2942506/2;pos=5;strand=-,AGCATTGCATGATTCTCCAGTATATTTGTAAAAAAAAAAAAAAAACTAAA,>3005047/1;pos=5;strand=-,AGCATTGCATGATTCTCCGGTATATTTGTAAAAAATAAAAAAAAACTAAA,>3011364/1;pos=5;strand=-,AGCATTGCATGATTCTCCAGTATATTTGTAAAAAAGAAAAAAAAACTAAA,>303616/1;pos=5;strand=-,AGCTTTGCATGATTCTCCAGTATATTTGTAAAAAATAAAAAAAAACTAAA,>3115572/1;pos=5;strand=-,AGCATTGCATGATGCTCCAGTATATTTGTAAAAAATAAAAAAAAACTAAA,>3197903/2;pos=5;strand=-,AGCATTGCNTGATTCTCCAGTATATTTGTAAAAAATAAAAAAAAACTAAA,>3470050/2;pos=5;strand=-,AGCATTGCATGATTCTCCAGTATNTTTGTAAAAAATAAAAAAAAACTAAA,>3511823/2;pos=5;strand=-,AGCATTGCATGATTCTCCAGTATAATTGTAAAAAATAAAAAAAAACTAAA,>3570105/2;pos=5;strand=-,AGCATTGCATGATTCTTCAGTATATTTGTAAAAAATAAAAAAAAACTAAA,>4024833/2;pos=5;strand=-,AGCATGGCATGATTCTCCAGTATATTTGTAAAAAATAAAAAAAAACTAAA,>4087882/2;pos=5;strand=-,AGCATTGCATGATTCGCCAGTATATTTGTAAAAAATAAAAAAAAACTAAA,>4662534/1;pos=5;strand=-,AGCATTGCATGATTCTCCNGTATATTTGTAAAAAATAAAAAAAAACTAAA,>4747511/1;pos=5;strand=-,AGCATTGCATGAGTCTCCAGTATATTTGTAAAAAATAAAAAAAAACTAAA,>4979352/2;pos=5;strand=-,AGCATTGCATGATTCNCCAGTATATTTGTAAAAAATAAAAAAAAACTAAA,>5179499/2;pos=5;strand=-,AGCATTGCATGATTCTCCAGTATATTTGTGAAAAATAAAAAAAAACTAAA,>5598116/2;pos=5;strand=-,AGNATTGCATGATTCTCCAGTATATTTGTAAAAAATAAAAAAAAACTAAA,>5611730/1;pos=5;strand=-,AGCAGTGCATGATTCTCCAGTATATTTGTAAAAAATAAAAAAAAACTAAA,>5771377/2;pos=5;strand=-,AGCATTGCATGNTTCTCCAGTATATTTGTAAAAAATAAAAAAAAACTAAA,>5771798/2;pos=5;strand=-,AGCATTGCATGATTCTCCAGNATATTTGTAAAAAATAAAAAAAAACTAAA,>5805949/2;pos=5;strand=-,AGCNTTGCATGATTCTCCAGTATATTTGTAAAAAATAAAAAAAAACTAAA,>5892025/2;pos=5;strand=-,AGCATTGCTTGATTCTCCAGTATATTTGTAAAAAATAAAAAAAAACTAAA,>6097780/1;pos=5;strand=-,AGCATTGCATGATTCTCCAGTATATTTGTAAAAAATGAAAAAAAACTAAA,>6827290/1;pos=5;strand=-,AGCATTGCATGATTCTCCAGTATATTTGTAAAAAATAAAAAGAAACTAAA,>6940671/2;pos=5;strand=-,AGCATTGCATGATTCTCCAGTNTATTTGTAAAAAATAAAAAAAAACTAAA,>6960046/1;pos=5;strand=-,AGCATTGCATGATCCTCCAGTATATTTGTAAAAAATAAAAAAAAACTAAA,>707110/2;pos=5;strand=-,AACATTGCATGATTCTCCAGTATATTTGTAAAAAATAAAAAAAAACTAAA,>7501892/1;pos=5;strand=-,AGCATTGCATGATTCTCCAGTATATNTGTAAAAAATAAAAAAAAACTAAA,>758372/2;pos=5;strand=-,NGCATTGCATGATTCTCCAGTATATTTGTAAAAAATAAAAAAAAACTAAA,>7700810/1;pos=5;strand=-,AGCATTGCATGATTCTCCAGTATATTTGTAAAAAATAATAAAAAACTAAA,>822207/2;pos=5;strand=-,GGCATTGCATGATTCTCCAGTATATTTGTAAAAAATAAAAAAAAACTAAA,>859475/2;pos=5;strand=-,AGCATTGCATGATTCTCCAGTATACTTGTAAAAAATAAAAAAAAACTAAA	C1062571,C1062684,C1062179
chr20	3801188	3802940	chr20	3835205	3838615	CLUSTER4	2	+	+	uc002wju.1:0-394,uc002wjs.1:0-353,uc002wjt.2:0-394	uc002wjy.3:0-11483,uc002wjv.2:102-619,uc010zqn.1:102-620,uc002wjx.3:102-11583,uc002wjw.3:102-11758	C20orf29	MAVS,VISA,KIAA1271	Read_Through	21494	2	2	2	0.181818181818	0.0555555555556	>6170537/2;pos=102;strand=-,AGGAACAGATTTTAGCTGTGGCCAGTCTCGTTTCCTCTCAGTCCATCCAC,>3260735/1;pos=118;strand=-,TGTGGCCAGTCTCGTTTCCTCTCAGTCCATCCACCCTTCATGGGGCCAGA	C1592571,C1592572,C1592570,C1592569,C1592568,C1592558,C1592559,C1592563,C1592562,C1592561,C1592560,C1592567,C1592566,C1592565,C1592564
chr10	49207727	49207825	chr10	75404645	75414038	CLUSTER17	2	-	-	uc010qgj.1:0-98	uc001jut.3:257-4916	FAM25B	SYNPO2L	Intrachromosomal_Complex	26196819	2	2	2	0.666666666667	1.0	>6351850/2;pos=53;strand=+,GCCGAGGGCCTGGCCCACCGCACCGAGAAGGCCACCGAGGGAGCCAATTC,>3638224/1;pos=55;strand=+,CGAGGGCCTGGCCCACCGCACCGAGAAGGCCACCGAGGGAGCCAATTCGA	C3078872
chr10	47181590	47181688	chr10	75404645	75414038	CLUSTER42	2	-	-	uc010qfw.1:0-98	uc001jut.3:257-4916	FAM25B	SYNPO2L	Intrachromosomal_Complex	28222956	2	2	2	0.666666666667	1.0	>6351850/2;pos=53;strand=+,GCCGAGGGCCTGGCCCACCGCACCGAGAAGGCCACCGAGGGAGCCAATTC,>3638224/1;pos=55;strand=+,CGAGGGCCTGGCCCACCGCACCGAGAAGGCCACCGAGGGAGCCAATTCGA	C3078861
chr10	48247662	48247760	chr10	75404645	75414038	CLUSTER77	2	+	-	uc010qge.1:0-98	uc001jut.3:257-4916	FAM25B	SYNPO2L	Intrachromosomal_Converging	27152521	2	2	2	0.666666666667	1.0	>6351850/2;pos=53;strand=+,GCCGAGGGCCTGGCCCACCGCACCGAGAAGGCCACCGAGGGAGCCAATTC,>3638224/1;pos=55;strand=+,CGAGGGCCTGGCCCACCGCACCGAGAAGGCCACCGAGGGAGCCAATTCGA	C3078869
chr13	113556509	113556685	chr13	113669077	113752863	CLUSTER38	2	+	+	uc001vso.2:0-176	uc001vsu.2:272-5259,uc001vsq.2:272-5446,uc001vss.3:230-3409,uc010tjr.1:238-5225,uc001vsr.2:418-5405,uc010tjs.1:230-5217	BC035340	MCF2L	Read_Through	10279	2	1	2	1.0	0.666666666667	>331115/2;pos=149;strand=+,ACACCGGAGGCGACGGCCATGGCCACAGATGAAATCATGCACCAGGACAT	C0656649,C0656647,C0656617,C0656616,C0656619,C0656622
chr16	81118068	81129980	chr16	81087103	81087699	CLUSTER47	2	-	-	uc002fge.2:0-456,uc002fgd.2:0-520	uc010chf.2:1313-1909	GCSH	C16orf46	Read_Through	-5058	2	1	2	0.133333333333	1.0	>3287622/2;pos=482;strand=+,AAAATCCAGGACTTGTAAACAAATCTTGTTATGAAGATGCACAGGAAAAA	C0950813,C0950814
chr7	122377009	122526554	chr7	122341724	122342369	CLUSTER69	2	-	-	uc010lkq.2:0-615,uc010lkp.2:0-615	uc010lkr.1:303-838	CADPS2	AK058116	Overlapping_Complex	0	2	1	2	0.2	1.0	>5397809/2;pos=309;strand=-,AGTTCGGAGTTATTATGAGGGGACGGAAAATATAGTCGCGGTGATGATAA	C2972727,C2972730
chrX	3817257	3820041	chrX	3735571	3736744	CLUSTER81	2	-	-	uc004crn.2:0-279	uc004crj.2:887-1241	AK000470	LOC389906	Intrachromosomal	-62058	2	1	2	1.0	0.166666666667	>401856/2;pos=883;strand=-,GCACTGCTGCCTATGCACTCCATTTACAGGGTTATAGAGTGGAAAGTCCC	C2549362
chrX	3778831	3781615	chrX	3735571	3736744	CLUSTER101	2	-	-	uc004crl.2:0-279	uc004crj.2:887-1241	AK000470	LOC389906	Read_Through	-23634	2	1	2	1.0	0.166666666667	>401856/2;pos=883;strand=-,GCACTGCTGCCTATGCACTCCATTTACAGGGTTATAGAGTGGAAAGTCCC	C2549359
chr10	71906289	71906432	chr10	71872030	71883853	CLUSTER107	2	-	-	uc001jqq.2:0-143	uc001jqp.1:201-3239,uc010qjg.1:0-2564	TYSND1	AIFM2	Read_Through	-5044	2	1	2	0.666666666667	0.4	>163439/2;pos=220;strand=-,TGCATGTGCCTGATTTGAGATGGGGTCCCAGGTCTCGGTGGAATCGGGAG	C0240873,C0240881
chr8	74659622	74659943	chr12	53290971	53291402	CLUSTER3	2	-	-	uc010lzk.2:0-321,uc010lzl.1:0-321	uc009zmj.2:1084-1515	STAU2	KRT8	Interchromosomal	None	2	0	2	1.0	0.0307692307692		C2982775,C2982780
chr22	42229106	42300978	chrM	1709	4262	CLUSTER6	2	+	+	uc003bbi.2:0-3373,uc003bbj.2:0-3004	uc004cos.3:0-2553	SREBF2	TVAS5	Interchromosomal	None	2	0	2	0.0625	1.0		C1785526,C1785283
chr6	5004050	5004193	chr6	5042740	5043171	CLUSTER7	2	+	+	uc003mwn.1:0-143	uc011dhz.1:224-655	AK094934	BC133670	Overlapping_Same	0	2	0	2	1.0	1.0		C2084037
chr5	134734752	134734928	chr12	27933187	27955972	CLUSTER8	2	-	+	uc003lar.1:0-176,uc003lap.1:0-176,uc011cxz.1:0-176,uc003lao.1:0-176,uc003lam.1:0-176,uc003lan.1:0-176,uc003laq.1:0-176	uc009zjj.2:0-6570,uc001rij.2:0-6467	H2AFY	KIAA1340,KLHDC5	Interchromosomal	None	2	0	2	0.0108108108108	1.0		C2009761,C2010872,C3398561,C2010177,C2010046,C2009892,C2010332,C2010735,C3398623,C2010990,C2010617,C2010463,C2011245,C2011127
chrM	237	368	chr8	101715144	101734315	CLUSTER10	2	-	-	uc004coq.3:0-131	uc003yjs.1:0-2859,uc003yjt.1:0-2850,uc011lhd.1:0-2583	DQ582201	PABPC1	Interchromosomal	None	2	0	2	1.0	1.0		C2495227,C2495896,C2495228
chr17	58422842	58469586	chr17	37560543	37599881	CLUSTER11	2	-	-	uc002iyo.1:0-471,uc010wov.1:0-471	uc002hrv.3:344-8145,uc002hru.2:344-2870,uc010wee.1:344-8012	USP32	MED1	Intrachromosomal	-20647163	2	0	2	0.0909090909091	0.010582010582		C3259866,C3259870,C3259868,C1218630,C1218632,C1218636
chrX	73251431	73513409	chrM	1709	4262	CLUSTER13	2	-	+	uc010nlq.1:0-939	uc004cos.3:0-2553	AK311345	TVAS5	Interchromosomal	None	2	0	2	1.0	1.0		C3011384
chr17	76164671	76167730	chr17	48445229	48447947	CLUSTER15	2	+	-	uc002juu.1:0-503	uc002iqr.2:71-2434,uc002iqq.2:71-701	SYNGR2	MRPL27	Intrachromsomal_Diverging	-27714108	2	0	2	0.0246913580247	0.010989010989		C1241531,C1241532
chrM	15999	16571	chrM	14762	15888	CLUSTER16	2	+	+	uc004coz.1:0-572	uc004coy.2:0-1126	AF079515	cytochrome_b	Adjacent_Complex	-110	2	0	2	1.0	1.0		C2547008
chr7	43921506	43945910	chr7	43906157	43908975	CLUSTER18	2	-	-	uc003tiv.2:0-834,uc011kbj.1:0-536,uc003tiw.2:0-219,uc003tiz.2:0-414,uc003tiy.2:0-214	uc003tit.1:90-695	URG4	MRPS24	Read_Through	-6357	2	0	2	0.153846153846	0.0169491525424		C2232546,C2232124,C2232405,C3734577,C2231983
chr1	243245192	243265046	chr10	38717074	38741080	CLUSTER19	2	-	+	uc001hzq.1:0-1855	uc009xme.2:0-5251	AL137733	LOC399744	Interchromosomal	None	2	0	2	0.2	1.0		C0208143
chr1	147931724	147931980	chr1	145004781	145005286	CLUSTER23	2	-	+	uc009wjx.1:0-256,uc009wjz.1:0-256,uc009wjy.1:0-256,uc001eql.2:0-256	uc001emi.3:0-505	FLJ39739	BC065231	Intrachromosomal_Converging	-2829840	2	0	2	1.0	1.0		C0119298,C2623283,C2623279,C2623272
chr2	242169248	242212301	chr1	36549945	36553875	CLUSTER27	2	-	+	uc002wbb.2:0-3871,uc002waz.2:0-3947,uc002wba.2:0-4091	uc001bzs.2:0-1730	HDLBP	TEKT2	Interchromosomal	None	2	0	2	0.0116959064327	1.0		C1585705,C1584806,C1583904
chr1	144340526	144340773	chr1	145004781	145005286	CLUSTER30	2	-	+	uc001ekr.3:0-247,uc001ekt.3:0-247	uc001emi.3:0-505	LOC728855	BC065231	Intrachromsomal_Diverging	664007	2	0	2	0.285714285714	1.0		C0118007,C0118001
chr1	143744201	143744587	chr1	145004781	145005286	CLUSTER31	2	-	+	uc009whx.2:0-386,uc001ejr.3:0-386,uc001ejp.3:0-386,uc009why.2:0-386	uc001emi.3:0-505	FLJ39739	BC065231	Intrachromsomal_Diverging	1260193	2	0	2	1.0	1.0		C2623112,C0117984,C2623105,C0117978
chr1	233431072	233431459	chr17	39679870	39681525	CLUSTER36	2	-	-	uc001hvl.2:0-387	uc010wfs.1:917-1824	PCNXL2	JUP	Interchromosomal	None	2	0	2	1.0	0.0232558139535		C0206907
chrM	7587	8295	chrM	237	368	CLUSTER40	2	+	-	uc004cou.3:0-708	uc004coq.3:0-131	X64709	DQ582201	Intrachromsomal_Diverging	-7218	2	0	2	1.0	1.0		C2527555
chr1	144520774	144520993	chr1	145004781	145005286	CLUSTER43	2	-	+	uc001eky.3:0-219,uc001ela.3:0-219	uc001emi.3:0-505	LOC728875,BC021732	BC065231	Intrachromsomal_Diverging	483787	2	0	2	0.285714285714	1.0		C0118030,C0118036
chr13	31480312	31491649	chr16	31200444	31203097	CLUSTER45	2	+	+	uc001uth.3:0-728	uc002ebg.2:880-1966	C13orf33	FUS/CHOP	Interchromosomal	None	2	0	2	1.0	0.0169491525424		C0651555
chr5	134262222	134262248	chrM	14762	15888	CLUSTER50	2	-	+	uc011cxx.1:0-26	uc004coy.2:0-1126	DQ584699	cytochrome_b	Interchromosomal	None	2	0	2	1.0	1.0		C3398531
chr11	65686381	65686531	chr9	34179011	34252520	CLUSTER54	2	-	+	uc009yqv.2:0-150,uc001ogi.2:0-150	uc010mka.1:0-1817,uc011loi.1:0-2608,uc003zty.2:0-2856,uc003ztx.2:0-2733,uc011loj.1:0-2692	C11orf68	UBAP1	Interchromosomal	None	2	0	2	0.4	1.0		C0398649,C0398648,C0398653,C0398655,C0398656,C2669758,C2669750,C2669751,C2669755,C2669757
chr4	185724474	185733413	chrM	1709	4262	CLUSTER55	2	-	+	uc003iwv.1:0-372,uc011ckn.1:0-372,uc003iww.2:0-488,uc011ckm.1:0-386,uc003iwt.1:0-326,uc003iwu.1:0-372	uc004cos.3:0-2553	ACSL1	TVAS5	Interchromosomal	None	2	0	2	0.0263157894737	1.0		C1949479,C1949499,C3386268,C3386297,C1949451,C1949525
chrM	5855	7427	chrM	12338	14645	CLUSTER56	2	+	+	uc011mfh.1:0-1572	uc004cox.3:0-2307	BC018860	MTND5	Intrachromosomal	4910	2	0	2	1.0	1.0		C3793614
chr11	73687686	73693889	chrM	14762	15888	CLUSTER57	2	-	+	uc001ouq.1:0-1013	uc004coy.2:0-1126	UCP2	cytochrome_b	Interchromosomal	None	2	0	2	0.133333333333	1.0		C0429314
chr20	60878027	60882884	chrM	14762	15888	CLUSTER58	2	+	+	uc002ycn.2:0-935,uc002yco.2:0-931	uc004coy.2:0-1126	ADRM1	cytochrome_b	Interchromosomal	None	2	0	2	0.0363636363636	1.0		C1703409,C1703364
chr6	139456249	139456804	chr17	76166898	76168800	CLUSTER60	2	+	+	uc003qin.2:0-555	uc002juu.1:126-1693,uc002jut.2:126-1573,uc002juv.1:126-1553	HECA	SYNGR2	Interchromosomal	None	2	0	2	1.0	0.0188679245283		C2195987,C2195986,C2195985
chr17	48450590	48458818	chrM	7587	8295	CLUSTER61	2	+	+	uc002iqs.1:0-2303,uc010dbq.1:0-1437,uc010dbp.1:0-2293	uc004cou.3:0-708	EME1	X64709	Interchromosomal	None	2	0	2	1.0	1.0		C1164001,C2822684,C2822730
chr14	99947739	99973484	chrM	1709	4262	CLUSTER63	2	+	+	uc001ygi.3:0-1246	uc004cos.3:0-2553	CCNK	TVAS5	Interchromosomal	None	2	0	2	0.0833333333333	1.0		C0707631
chr3	128968453	128991258	chr7	130146080	130295824	CLUSTER67	2	+	-	uc010htb.2:0-2438,uc003els.2:0-2257	uc003vqh.1:825-1732	COPG	COPG2	Interchromosomal	None	2	0	2	0.0183486238532	0.666666666667		C1860479,C2925205
chr17	36932850	36943173	chr17	56801401	56811690	CLUSTER68	2	-	+	uc010wdu.1:0-676	uc002iwv.2:924-1260	PIP4K2B	RAD51C	Intrachromsomal_Diverging	19826789	2	0	2	1.0	0.0555555555556		C3224608
chr13	98794816	99047730	chrM	1709	4262	CLUSTER70	2	+	+	uc001vnh.2:0-1652,uc001vnj.2:0-1749	uc004cos.3:0-2553	FARP1	TVAS5	Interchromosomal	None	2	0	2	0.0434782608696	1.0		C0655209,C0655362
chr11	10822509	10829631	chrM	1709	4262	CLUSTER71	2	-	+	uc001mjf.1:0-2061	uc004cos.3:0-2553	EIF4G2	TVAS5	Interchromosomal	None	2	0	2	1.0	1.0		C0303019
chr19	15443101	15443342	chr19	14072343	14104707	CLUSTER74	2	-	-	uc002nat.3:0-241,uc002nau.3:0-59	uc002mxv.2:220-4375,uc010dzi.2:220-2121	BRD4	RFX1	Intrachromosomal	-1246671	2	0	2	0.0555555555556	0.666666666667		C1371505,C1372637,C1372096,C1372777
chr19	10254442	10255430	chrM	1709	4262	CLUSTER82	2	-	+	uc002mnh.2:0-3255,uc010xlc.1:0-3295,uc002mnf.2:0-988,uc002mng.2:0-3247,uc010xld.1:0-3247	uc004cos.3:0-2553	DNMT1	TVAS5	Interchromosomal	None	2	0	2	0.0384615384615	1.0		C1347355,C1344895,C3282819,C3285279,C1343947
chr19	2050800	2051243	chrM	7587	8295	CLUSTER84	2	-	+	uc010xgv.1:0-146,uc002lur.2:0-295,uc002lus.2:0-295	uc004cou.3:0-708	MKNK2,DKFZp586A1021	X64709	Interchromosomal	None	2	0	2	0.0833333333333	1.0		C1322309,C3277744,C1321490
chr20	62121832	62130505	chrM	14762	15888	CLUSTER85	2	-	+	uc010gkg.1:0-1194	uc004coy.2:0-1126	EEF1A2	cytochrome_b	Interchromosomal	None	2	0	2	1.0	1.0		C2904648
chrM	237	368	chrM	12338	14645	CLUSTER87	2	-	+	uc004coq.3:0-131	uc004cox.3:0-2307	DQ582201	MTND5	Intrachromsomal_Diverging	11969	2	0	2	1.0	1.0		C2495266
chr12	123180871	123215390	chr12	123185840	123187904	CLUSTER88	2	-	-	uc001ucw.1:0-1838	uc001ucx.1:0-2064	GPR81	NIACR1	Overlapping_Complex	0	2	0	2	1.0	1.0		C0595839
chr17	37595418	37607527	chr17	48548389	48552200	CLUSTER89	2	-	+	uc002hru.2:0-639,uc002hrv.3:0-639	uc010wmm.1:1394-2313,uc002iqu.2:1319-2238,uc010wml.1:1190-2109,uc010wmn.1:1280-2199,uc010dbt.1:104-871,uc010wmo.1:994-1913	MED1	UNQ493,ACSF2	Intrachromsomal_Diverging	10895991	2	0	2	0.0277777777778	0.0192307692308		C1075056,C1075593,C1074978,C1076056,C1075060,C1075928,C1076063,C1076059,C1076061,C1075058,C1075045,C1075053
chr1	1072397	1079432	chr9	139270030	139290222	CLUSTER90	2	+	-	uc001acv.2:0-1615	uc004chh.2:186-4648	BC028014	SNAPC4	Interchromosomal	None	2	0	2	1.0	0.25		C0014250
chr17	37856254	37856564	chr17	61509666	61515531	CLUSTER92	2	+	-	uc010wek.1:0-310	uc002jaq.2:0-3013	ERBB2	CYB561	Intrachromosomal_Converging	23624751	2	0	2	0.0740740740741	1.0		C3236911
chr12	58005218	58005774	chr16	2012062	2014629	CLUSTER93	2	+	-	uc001spa.2:0-556,uc001spb.2:0-556	uc002cnl.2:0-747,uc010bsa.1:0-1544,uc002cnm.2:0-1027	GEFT	OK/KNS-cl.6	Interchromosomal	None	2	0	2	1.0	1.0		C0572086,C0572085,C0572090,C0572083,C0572078,C0572079
chr17	37894187	37899554	chrM	1709	4262	CLUSTER94	2	+	+	uc010cwc.2:0-849,uc002hsr.2:0-834,uc002hss.2:0-690,uc002hst.2:0-634	uc004cos.3:0-2553	GRB7	TVAS5	Interchromosomal	None	2	0	2	0.0157480314961	1.0		C1133800,C2817633,C1133521,C1134043
chrX	49126317	49138526	chrX	49218320	49223952	CLUSTER95	2	+	+	uc004dnh.1:0-1158,uc004dni.2:0-226,uc004dnj.1:0-586,uc011mnd.1:0-492	uc011mnr.1:211-457,uc011mnp.1:211-457,uc011mns.1:211-457,uc011mno.1:211-457,uc011mnq.1:211-457,uc010njd.2:181-427	PPP1R3F	GAGE1,GAGE2A	Intrachromosomal	72556	2	0	2	0.4	1.0		C2565360,C2565283,C2565365,C2565867,C2565802,C2565862,C3808973,C2565626,C2565621,C2565616,C2565606,C2565882,C3808958,C3808978,C2565611,C2565350,C2565355,C2565370,C2565877,C2565872,C3808880,C2565545,C3808963,C3808968
chr8	68497705	68497734	chrM	14762	15888	CLUSTER98	2	-	+	uc011ley.1:0-29	uc004coy.2:0-1126	DQ584699	cytochrome_b	Interchromosomal	None	2	0	2	1.0	1.0		C3764012
chr16	56965748	56976149	chrM	1709	4262	CLUSTER99	2	+	+	uc010ccp.1:0-942	uc004cos.3:0-2553	HERPUD1	TVAS5	Interchromosomal	None	2	0	2	0.0555555555556	1.0		C2760231
chr8	145625382	145628620	chr3	184025145	184026840	CLUSTER100	2	-	+	uc003zck.1:0-1329	uc011brk.1:1782-2636,uc003fnn.1:2067-2921,uc011brj.1:1771-2625	CPSF1	PSMD2	Interchromosomal	None	2	0	2	0.222222222222	0.010101010101		C2377293,C2377321,C2377322
chr7	45808259	45808617	chr1	224189609	224197818	CLUSTER102	2	-	+	uc003tnf.3:0-358,uc003tnh.2:0-358	uc001hog.1:0-2668	SEPT13	AK124970	Interchromosomal	None	2	0	2	0.333333333333	1.0		C2240629,C2240612
chr20	34252682	34252848	chr20	43804502	43805184	CLUSTER104	2	-	+	uc002xds.2:0-166,uc002xdf.2:0-166,uc002xdi.2:0-166,uc010gfk.1:0-166,uc002xdl.2:0-166,uc002xdh.2:0-166,uc002xdq.2:0-166,uc002xdj.2:0-166,uc010gfj.2:0-166,uc002xdr.2:0-166	uc002xng.2:103-552	RBM12,CPNE1,KIAA0765	PI3	Intrachromsomal_Diverging	9550691	2	0	2	0.0235294117647	1.0		C1616248,C1617107,C1616869,C1616688,C1616988,C1616358,C1616026,C2895140,C2895167,C1616468
chr17	37356536	37360980	chrM	10579	12138	CLUSTER105	2	+	+	uc002hrr.1:0-1066,uc002hrq.1:0-731	uc004cov.3:0-1559	RPL19	STRF6	Interchromosomal	None	2	0	2	1.0	1.0		C1071502,C1074129
chr1	149576453	149576700	chr1	145004781	145005286	CLUSTER106	2	+	+	uc001esk.3:0-247,uc009wld.2:0-247,uc009wlb.1:0-539,uc001esl.3:0-247	uc001emi.3:0-505	BC110832,LOC728855	BC065231	Intrachromosomal_Complex	-4571166	2	0	2	0.285714285714	1.0		C0119462,C0119466,C2623379,C2623369
chr1	11714088	11714401	chr9	35099893	35102820	CLUSTER109	2	-	-	uc009vnb.1:0-313	uc003zwk.2:35-1199	FBXO2	STOML2	Interchromosomal	None	2	0	2	1.0	0.111111111111		C2607673
chr7	130295826	130353598	chr3	128976570	128996614	CLUSTER110	2	-	+	uc003vqh.1:0-824	uc010htb.2:1018-3252,uc003els.2:837-3071	COPG2	COPG	Interchromosomal	None	2	0	2	1.0	0.020202020202		C2274270,C2274272
chr11	61560150	61560500	chr11	61605250	61634825	CLUSTER111	2	+	+	uc001nsg.2:0-350	uc010rlo.1:293-3084,uc001nsj.2:171-2962	FEN1	FADS2	Read_Through	19020	2	0	2	0.0444444444444	0.0555555555556		C0346023,C0345976
chr11	828230	831991	chrM	8664	9990	CLUSTER112	2	+	+	uc009ycm.1:0-1819,uc001lrv.2:0-1859	uc011mfi.1:0-1326	EFCAB4A	OK/SW-cl.16	Interchromosomal	None	2	0	2	1.0	1.0		C2648150,C0275761
