#chrom5p	start5p	end5p	chrom3p	start3p	end3p	chimera_cluster_id	score	strand5p	strand3p	transcript_ids_5p	transcript_ids_3p	genes5p	genes3p	type	distance	total_frags	spanning_frags	unique_alignment_positions	isoform_fraction_5p	isoform_fraction_3p	breakpoint_spanning_reads	chimera_ids
chr8	125551266	125551329	chr17	38060850	38066177	CLUSTER10	124	-	-	uc003yre.2:0-63,uc003yrd.2:0-129,uc010mdm.2:0-63,uc003yrd.2:0-63,uc003yre.2:0-129,uc010mdm.2:0-127,uc003yrf.2:0-129,uc003yrf.2:0-63	uc010cwl.2:412-1319,uc010cwj.2:581-1470,uc002htg.2:631-1623,uc010cwi.2:51-789,uc002htg.2:800-1623,uc010cwi.2:212-789,uc010cwm.2:439-1177,uc010wem.1:529-1560,uc010cwk.2:608-1346,uc010wem.1:983-1560,uc002hth.2:538-1557,uc010cwl.2:742-1319,uc002hth.2:819-1557,uc010cwj.2:732-1470,uc002htg.2:885-1623,uc010wem.1:698-1560,uc010cwm.2:600-1177,uc010cwk.2:769-1346,uc010cwj.2:412-1470,uc010cwj.2:893-1470,uc002htg.2:1046-1623,uc002hth.2:980-1557,uc010wem.1:822-1560,uc002hth.2:707-1557,uc010cwk.2:412-1346,uc010cwl.2:581-1319	TATDN1	GSDMB	Interchromosomal	None	124	97	109	0.849315068493	0.861111111111	>1117067/1;pos=18;strand=+,TGGGGAGGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAG,>73095/2;pos=18;strand=+,CGGGGAGGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAG,>991567/2;pos=19;strand=+,GGGGAGGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGC,>1272584/2;pos=20;strand=+,GGGAGGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCT,>8512389/2;pos=20;strand=+,GGGAGGTCTTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCT,>724871/2;pos=21;strand=+,GGAGGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTG,>4607460/1;pos=22;strand=+,GAGGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGA,>680521/1;pos=22;strand=+,GAGGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGCTTATCGGAAGCTGA,>5594084/2;pos=23;strand=+,AGGTCCTCCATGCGTAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAA,>8663415/1;pos=23;strand=+,AGGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAA,>8335563/1;pos=24;strand=+,GGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAG,>1157542/2;pos=25;strand=+,GTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGA,>884517/1;pos=25;strand=+,GTCCTCCATGCGAAGTCATGAGTCGCGTCAAGTTTATCGGAAGCTGAAGA,>3703355/2;pos=25;strand=+,GTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGGAGA,>8638525/1;pos=25;strand=+,GTCCTACATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGA,>2708467/1;pos=25;strand=+,GTCCTCCATGCGCAGCCATGAGTCGCTTCAAGTTCATCGGAAGCTGAAGA,>811187/2;pos=25;strand=+,GTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGATGAAGA,>360792/1;pos=25;strand=+,GTCCTCCATGCGCAGTCATCAGTCGCTTCAAGTTTATCGGAAGCTGAAGA,>3816668/1;pos=25;strand=+,GTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGGTGAAGA,>5954491/2;pos=27;strand=+,CCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGGTGAAGAGG,>6825057/2;pos=27;strand=+,CCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGG,>5311881/2;pos=27;strand=+,CCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGGAGGTGAAGAGG,>5556127/2;pos=28;strand=+,CTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGG,>3314382/2;pos=28;strand=+,CTCCATGCGCAGTCATGAGTCGCTTTAAGTGTATCGGAAGCTGAAGAGGG,>1254528/2;pos=28;strand=+,CTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGGTGAAGAGGG,>1321669/2;pos=29;strand=+,TCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGGA,>1690971/2;pos=29;strand=+,TCAATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGGA,>5479429/1;pos=29;strand=+,TCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCCGAAGAGGGA,>1635413/1;pos=30;strand=+,CCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGGAA,>5524021/1;pos=30;strand=+,TCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGGAA,>3780502/2;pos=31;strand=+,CATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGGAAC,>3261140/2;pos=31;strand=+,CATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGGGAC,>193344/1;pos=32;strand=+,ATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGGAACT,>8664328/2;pos=32;strand=+,ATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGACGGAACT,>2208941/2;pos=32;strand=+,ATGCGCAGTCATGAGTCGCTTCAAGTTTATTGGAAGCTGAAGAGGGGACT,>6340598/2;pos=33;strand=+,TGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGGAACTA,>237483/2;pos=33;strand=+,TGCGCAGTCATGAGTCGCTTCAAGTTTATCCGAAGCTGAAGAGGGAACTA,>3426379/2;pos=34;strand=+,GCGCAGTCATGAGTCGCTTCAAGTTTACCGGAAGCTGAAGAGGGGACTAC,>7166303/2;pos=35;strand=+,CGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGGGACTACC,>6440297/1;pos=35;strand=+,CGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGGAACTACC,>5454875/1;pos=36;strand=+,GCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGGAACTACCC,>3553396/2;pos=36;strand=+,GCAGTCATGAGTCGCTTCAAGGTTATCGGAAGCTGAAGAGGGGACTACCC,>6646781/1;pos=37;strand=+,CAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGGAACTACCCT,>439667/1;pos=37;strand=+,CAGTCATGAGGCGCTTCAAGTTTATCGGAAGCTGAAGAGGGAACTACCCT,>3168046/1;pos=39;strand=+,GTCATGAGTCGCTTCAAGTTTATCGGCAGCTGCAGAGGGAACTACCCTTT,>4240079/1;pos=39;strand=+,GTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGGAACTACCCTTT,>346998/2;pos=39;strand=+,GTCATGAGTCGCTTCCAGTTTATCGGAAGCTGAAGAGGGAACTACCCTTT,>1793965/1;pos=39;strand=+,ATCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGGAACTACCCTTT	C2767112,C2767111,C2767110,C2767115,C2765789,C2765786,C2765781,C2765783,C2766464,C2766465,C2766466,C2767128,C2767126,C2767124,C2767122,C2767120,C2765799,C2766045,C2765794,C2765791,C2765790,C2765813,C2765814,C2765815,C2767136,C2766054,C2766050,C2766053,C2766052,C2766445,C2766442,C2766440,C2766441,C3450545,C2765803,C2765801,C2765807,C2765805,C3450523,C2766458,C3450494,C2766450,C2766452,C3450490,C2766454,C3450492,C2766456,C2765755,C3450539,C3450533,C3450531,C3450535,C2767135,C2767134,C2766428,C2767385,C2766424,C2766421,C3450505,C3450500,C3450501,C2767394,C2767390,C2767393,C2767392,C2766437,C2766434,C2766432,C2766430,C2767094,C2767091,C2765757,C2765756,C2767098,C3450740,C2767076,C2767077,C3450515,C3450514,C3450746,C3450518,C2767078,C2767089,C2767088,C2766406,C2766407,C3450745,C2766408,C2767082,C2767084,C2767087,C2766723,C2766722,C2766720,C2765768,C2766724,C2765766,C2765767,C2765763,C2765761,C2767100,C2767102,C2767104,C2767107,C2766414,C2766417,C2766412,C2766419,C2766418,C2765770,C2765773,C2766715,C2765777,C2765779
chr17	76778284	76778376	chr8	117657056	117768258	CLUSTER33	13	-	-	uc002jvw.2:0-92	uc003yob.2:741-2056,uc003yob.2:809-2056	CYTH1	EIF3H	Interchromosomal	None	13	9	13	0.541666666667	0.928571428571	>7802875/2;pos=753;strand=-,GACGACAGCTACGATCATTCCATCGGAAAGAGGTCGAAAATGTACAGTAG,>4043447/2;pos=755;strand=-,CGACAGCTACGATCATTCCATCGGAAAGAGGTCGAAAATGTACAGTAGGC,>7516437/2;pos=744;strand=-,ATGGAGGAGGACGACAGCTACGATCATTCCATCGGAAAGAGGTCGAAAAT,>7930509/1;pos=750;strand=-,GAGGACGACAGCTACGATCATTCCATCGGAAAGAGGTCGAAAATGTACAG,>1713742/1;pos=61;strand=+,CTCCCGCACCATGGAGGAGGACGACAGCTACGATCATTCCATCGGAAAGA,>6995599/1;pos=61;strand=+,CTCCCACACCATGGAGGAGGACGACAGCTACGATCATTCCATCGGAAAGA,>3060384/2;pos=744;strand=-,ATGAAGGAGGACGACAGCTACGATCATTCCATCGGAAAGAGGTCGAAAAT	C1432441,C1432440
chr3	4418014	4508954	chr3	37094117	37170640	CLUSTER14	10	-	-	uc011ast.1:0-642,uc003bpz.1:0-1038,uc011ass.1:0-963,uc010hby.1:0-978,uc003bps.1:0-1038	uc003cgs.3:513-2922,uc003cgr.2:703-3112,uc003cgp.2:513-3813,uc003cgt.3:513-2850,uc011ayf.1:239-2885	SUMF1	LRRFIP2	Intrachromosomal_Complex	32585162	10	4	9	1.0	0.357142857143	>4385564/2;pos=1006;strand=+,GTGAAGAAAGGTGGATCCTACATGTGACATAGGGCAGAGGCAAGGCTGGC,>2573104/2;pos=994;strand=+,GGGAAAGACCGAGTGAAGAAAGGTGGATCCTACATGTGCCATAGGGCAGA,>7208121/1;pos=9;strand=-,AAGACCGAGTGAAGAAAGGTGGATCCTACATGTGCCATAGGGCAGAGGCG,>7726163/1;pos=33;strand=+,CCTACATGTGCCATAGGGCAGAGGCAAGGCTGGCAGCAAAACGGGCTGCC	C3907849,C2023189,C2023181,C2023180,C2023186,C3907844,C3907843,C2023203,C3907825,C2023206,C2023207,C3355577,C3355579,C3355578,C3907853,C2023197,C3907832,C3907835,C3907852,C2023190,C3907839,C3907829,C2023198
chr5	139781429	139825560	chr5	141232683	141234001	CLUSTER42	7	+	-	uc003lfp.2:0-1237,uc003lfr.2:0-1270,uc003lfo.2:0-1270,uc003lfq.1:0-1270,uc010jfk.2:0-1270,uc003lfs.1:0-1270	uc003llp.2:3436-4754	ANKRD17,ANKHD1-EIF4EBP3,ANKHD1	PCDH1	Intrachromosomal_Converging	1380621	7	2	7	0.225806451613	0.777777777778	>8092722/1;pos=3451;strand=-,TGCTACAAAGCCCTTCGCCCTTTGCCTGATGTCGCCATGACAGGCACATG,>4383947/2;pos=3447;strand=-,TGCTTGCTACAAAGACCTTCGCCCTTTGCCTGATGTCGCCATGACAGGCA	C2332924,C3401209,C2333068,C2333427,C2332910,C2332917
chr1	147931724	147931980	chr1	145004781	145005286	CLUSTER0	7	-	+	uc009wjz.1:0-256,uc009wjy.1:0-256,uc001eqn.2:0-180,uc001eqo.1:0-419,uc001eql.2:0-256,uc009wjx.1:0-256	uc001emi.3:0-505	FLJ39739,BC110832	BC065231	Intrachromosomal_Converging	-2829840	7	0	7	1.0	1.0		C0196874,C0196870,C0196872,C3045387,C3045385,C3045383
chr1	144340526	144340773	chr1	145004781	145005286	CLUSTER19	7	-	+	uc001ekv.2:0-247,uc001ekr.3:0-247,uc001ekt.3:0-247	uc001emi.3:0-505	LOC728855	BC065231	Intrachromsomal_Diverging	664007	7	0	7	0.777777777778	1.0		C0192117,C0192127,C0192133
chr1	143744201	143744587	chr1	145004781	145005286	CLUSTER22	7	-	+	uc009whx.2:0-386,uc001ejr.3:0-386,uc001ejp.3:0-386,uc009why.2:0-386	uc001emi.3:0-505	FLJ39739	BC065231	Intrachromsomal_Diverging	1260193	7	0	7	1.0	1.0		C3044954,C0192062,C0192066,C3044952
chr1	149576453	149576700	chr1	145004781	145005286	CLUSTER43	7	+	+	uc001esk.3:0-247,uc009wlc.2:0-247,uc009wld.2:0-247,uc009wlb.1:0-539,uc001esl.3:0-247	uc001emi.3:0-505	BC110832,LOC728855	BC065231	Intrachromosomal_Complex	-4571166	7	0	7	0.777777777778	1.0		C3045488,C3045491,C3045486,C0197525,C0197531
chr1	144520774	144520993	chr1	145004781	145005286	CLUSTER44	7	-	+	uc001eky.3:0-219,uc001ela.3:0-219	uc001emi.3:0-505	LOC728875,BC021732	BC065231	Intrachromsomal_Diverging	483787	7	0	7	0.777777777778	1.0		C0192287,C0192297
chr17	38465446	38465538	chr8	79485046	79515484	CLUSTER52	7	+	+	uc002huk.1:0-92	uc003yba.2:368-2182	RARA	PKIA	Interchromosomal	None	7	4	6	0.875	1.0	>1547763/2;pos=367;strand=-,CCCCCTGCCAGCACACACCTGAGCAGTTTCCTGACTTTCTGAGAAGCCCC,>4121770/1;pos=368;strand=-,CCCCTGCCAGCACACACCTGAGCAGTTTCCTGACTTTCTGAGAAGCCCTG,>8008572/2;pos=370;strand=-,CCTGCCAGCACACACCTGAGCAGTTTCCTGACTTTCTGAGAAGCCCTGGG	C1326512
chr7	77325213	77326662	chr7	77313168	77314643	CLUSTER11	7	-	-	uc003ugj.1:0-1449	uc003ugk.3:0-525	BC037783	AF290475	Overlapping_Complex	0	7	0	6	1.0	1.0		C2625091
chr1	153934696	153935789	chr1	153920154	153927642	CLUSTER40	5	-	-	uc001fdj.2:0-1077,uc001fdl.2:0-783,uc001fdk.2:0-405,uc001fdh.2:0-486,uc001fdi.2:0-613	uc010ped.1:223-2582	SLC39A1	CRTC2	Read_Through	-545	5	5	5	0.0526315789474	0.384615384615	>2579433/1;pos=233;strand=-,GCCTTGCACGTGACGTTACAGGCCCAAAAACTGCGACTGGCATACACAAG,>6389973/2;pos=225;strand=-,CCCTGGCAGCCTTGCACGTGACGTTACAGGCCCAAAAACTGCGACTGGCC,>1392880/1;pos=225;strand=-,CCCTGGCAGCCTTGCACGTGACGTTACAGGCCCAAAAACTGCGACTGGCA	C0229266,C0229425,C0229744,C0229109,C0229584
chrM	12338	14645	chrM	1709	4262	CLUSTER24	5	+	+	uc004cox.3:0-2307	uc004cos.3:0-2553	MTND5	TVAS5	Intrachromosomal_Complex	-8075	5	0	5	1.0	1.0		C2918420
chr20	44483798	44486035	chr2	114346127	114356611	CLUSTER30	4	-	+	uc010zxe.1:0-342,uc002xqa.1:0-342	uc010fkx.1:0-1046,uc002tka.2:276-1955,uc002tkd.2:0-1656	hNAACTE,ACOT8	DKFZp434K1323	Interchromosomal	None	4	2	4	0.190476190476	1.0	>6299702/2;pos=303;strand=+,GTCCACGTGCACTCCCTGCACTGCTACTTTGTTCGGGCAGGCACCATGAC,>6299702/1;pos=295;strand=-,GGGCAGGCACCATGACTCCTGTGAGGATGCAGCACTCCCTGGCAGGTCAG,>3263231/1;pos=316;strand=+,CCCTGCACTGCTACTTTGTTCGGGCAGGCACCATGACTCCTGTGAGGATG	C1893786,C1893783,C3879512,C1893835,C3879509,C3879544
chr20	44483798	44486035	chr15	102506273	102516807	CLUSTER45	4	-	+	uc010zxe.1:0-342,uc002xqa.1:0-342	uc002cdi.2:829-2552,uc010bpk.1:829-1509,uc010utu.1:829-1904,uc002cdj.2:0-451,uc002cdk.2:0-1701,uc010utt.1:829-1231	hNAACTE,ACOT8	FLJ00038,WASH2P,DKFZp434K1323	Interchromosomal	None	4	2	4	0.190476190476	0.166666666667	>6299702/2;pos=303;strand=+,GTCCACGTGCACTCCCTGCACTGCTACTTTGTTCGGGCAGGCACCATGAC,>3263231/1;pos=316;strand=+,CCCTGCACTGCTACTTTGTTCGGGCAGGCACCATGACTCCTGTGAGGATG	C1893856,C3879540,C1893686,C1893684,C1893683,C1893858,C3879498,C3879565,C3879567,C3879500,C1893814,C3879497
chr20	44483798	44486035	chr12	78786	80502	CLUSTER49	4	-	+	uc010zxe.1:0-342,uc002xqa.1:0-342	uc010sdb.1:0-865,uc010sda.1:0-451	hNAACTE,ACOT8	DKFZp434K1323	Interchromosomal	None	4	2	4	0.190476190476	1.0	>6299702/2;pos=303;strand=+,GTCCACGTGCACTCCCTGCACTGCTACTTTGTTCGGGCAGGCACCATGAC,>6299702/1;pos=19;strand=-,GGGCAGGCACCATGACTCCTGTGAGGATGCAGCACTCCCTGGCAGGTCAG,>3263231/1;pos=316;strand=+,CCCTGCACTGCTACTTTGTTCGGGCAGGCACCATGACTCCTGTGAGGATG	C3879561,C3879563,C1893854,C1893852
chr2	10262735	10269281	chr2	10281981	10351856	CLUSTER7	4	+	+	uc002rah.2:0-1207	uc002rai.1:260-1901	RRM2	C2orf48	Read_Through	9960	4	1	4	0.0258064516129	1.0	>105998/1;pos=1175;strand=+,GACAGACTTATGCTGGAACTGGGTTTTAGCAAGGTGCTGGGAGACCGTGA	C1644132
chr1	164595273	164595333	chr1	164761731	164821045	CLUSTER37	3	+	+	uc001gcu.1:0-60	uc010pkv.1:449-6608,uc001gct.2:523-6682,uc010pkw.1:73-1529,uc001gcs.2:523-6569,uc010pku.1:523-1947	AX748175	PBX1	Overlapping_Complex	0	3	3	3	1.0	0.0241935483871	>8164502/2;pos=16;strand=+,AGCCCACACACCACCACCCCAGTTTTGGGTGGGGAGAAGGCAAAGTTTTG,>2196150/1;pos=34;strand=+,CCAGGTTTGGGTGGGGAGAAGGCAAAGTTTTGAGTATCCGAGGAGCCCAG,>5822155/1;pos=37;strand=+,GGAGAAGGCAAAGTTTTGAGTATCCGAGGAGCCCAGGAGGAGGAACCCAC	C0271043,C0271042,C0271041,C0271039,C0271040
chr4	76649460	76649795	chr4	76567955	76587233	CLUSTER31	3	-	-	uc010iiy.2:0-335	uc003hir.2:141-4272,uc003his.2:276-4407,uc003hit.2:276-4308	AK311578	G3BP2	Read_Through	-50354	3	2	3	0.75	0.214285714286	>4300715/1;pos=159;strand=-,GTGACAGCATTTGACATTGTGCAGCAAAGAAATGGTTATGGAGAAGCCCG,>4393372/1;pos=312;strand=+,ATTTTCCTTTGGCCAACGTGACAGCATTTGACATTGTGCAGCAAAGAAAT	C3389037,C3389039,C3389038
chr20	47444179	47444420	chr20	34213968	34215335	CLUSTER8	3	-	-	uc002xtw.1:0-241	uc002xdc.2:743-1449	PREX1	CPNE1	Intrachromosomal	-13021516	3	0	3	0.0769230769231	0.09375		C1901729
chr17	27445063	27467404	chr7	44796977	44809476	CLUSTER25	3	-	+	uc002hds.2:0-1154,uc010csa.1:0-2299,uc002hdu.1:0-2195,uc010wbc.1:0-843,uc002hdt.1:0-2195,uc010wbd.1:0-1085	uc003tls.2:430-5000,uc003tlq.2:385-4955,uc003tlr.2:491-5139	MYO18A	ZMIZ2	Interchromosomal	None	3	0	3	0.3	0.428571428571		C3737417,C3228661,C3737468,C3228660,C3737418,C1251339,C3228662,C1252829,C1252828,C1254281,C1254283,C1254282,C3737467,C3737466,C3737419,C1252827,C1251341,C1251340
chr1	154561027	154580682	chr8	17446977	17500623	CLUSTER29	3	-	+	uc001ffk.2:0-2976,uc001ffi.2:0-3006,uc001ffh.2:0-3084,uc001ffj.2:0-2949	uc003wxr.2:172-1557	ADAR	PDGFRL	Interchromosomal	None	3	0	3	0.0545454545455	1.0		C0239345,C0238507,C0237669,C0240183
chr7	130295824	130353598	chr3	128976570	128996614	CLUSTER46	3	-	+	uc003vqh.1:0-825	uc010htb.2:1018-3252,uc003els.2:837-3071	COPG2	COPG	Interchromosomal	None	3	0	3	0.75	0.063829787234		C2676526,C2676523
chr17	60536019	60637487	chr9	141134070	141134172	CLUSTER23	2	+	+	uc010ddp.2:0-1098,uc002izz.3:0-1101,uc010wpd.1:0-747,uc002jaa.3:0-1005,uc002izx.3:0-1086	uc011mfe.1:1175-1277	TLK1,TLK2	FAM157B	Interchromosomal	None	2	2	2	0.285714285714	0.5	>7480946/1;pos=1058;strand=+,CAATGAGCAAGAAACTCCTTATAGAAAAGATGATGATTATTCCCCACCTT,>3663694/1;pos=1185;strand=-,CTCCTTATAGAAAAGATGATGATTATTCCCCACCTTCTAAGAGACAAAGC	C3782466,C1369558,C3267095,C1369738,C1369649
chr17	60536019	60637487	chr3	197907626	197907735	CLUSTER27	2	+	+	uc010ddp.2:0-1098,uc002izz.3:0-1101,uc010wpd.1:0-747,uc002jaa.3:0-1005,uc002izx.3:0-1086	uc011bup.1:1172-1281,uc011buq.1:196-1497,uc011buq.1:306-1497	TLK1,TLK2	FAM157A	Interchromosomal	None	2	2	2	0.285714285714	1.0	>7480946/1;pos=1058;strand=+,CAATGAGCAAGAAACTCCTTATAGAAAAGATGATGATTATTCCCCACCTT,>3663694/1;pos=1182;strand=-,CTCCTTATAGAAAAGATGATGATTATTCCCCACCTTCTAAGAGACAAAGC	C3782454,C3782452,C3782453,C1369545,C1369544,C3267081,C1369546,C1369637,C1369636,C1369635,C3267082,C3267083,C1369725,C1369724,C1369726
chr19	38755202	38781215	chr19	38795015	38795646	CLUSTER38	2	+	+	uc002ohr.1:0-922,uc002ohs.1:0-751	uc002ohu.1:120-460,uc002ohv.1:120-519	SPINT2	IMUP,C19orf33	Read_Through	11695	2	2	2	0.0135135135135	0.0625	>4701297/1;pos=135;strand=-,GGCTCAAAGGCCCTGGAGCCCACCTCCCAGAAGCCCGGTGTGGGGGCGGG,>4011915/2;pos=896;strand=+,ATCCTCCCCTGCCCCTTGGCTCAAAGGCCCTGGAGCCCACCTCCCAGAAG	C1580519,C1580434,C1580432,C1580517
chr17	60536019	60637487	chr11	141453	169052	CLUSTER50	2	+	-	uc010ddp.2:0-1098,uc002izz.3:0-1101,uc010wpd.1:0-747,uc002jaa.3:0-1005,uc002izx.3:0-1086	uc001lnz.2:243-1430,uc001lnz.2:133-1430	TLK1,TLK2	AL137655	Interchromosomal	None	2	2	2	0.285714285714	0.333333333333	>7480946/1;pos=1058;strand=+,CAATGAGCAAGAAACTCCTTATAGAAAAGATGATGATTATTCCCCACCTT,>3663694/1;pos=143;strand=-,CTCCTTATAGAAAAGATGATGATTATTCCCCACCTTCTAAGAGACAAAGC	C3782433,C3782432,C3267007,C1369564,C1369655,C1369654,C1369563,C3267008,C1369525,C1369524
chr4	77507293	77507622	chr4	77631309	77704403	CLUSTER2	2	+	+	uc011cby.1:0-329	uc011cbx.1:1276-11016,uc011cbz.1:245-3878	AK097800	SHROOM3,hShrmL	Overlapping_Complex	0	2	1	2	1.0	1.0	>5337094/2;pos=291;strand=+,TGAGGACAATGGACCTGCCTGGGCATAGACTTCCTTAAGAGATGTGTGCA	C3947376,C3947377
chr17	29159023	29206505	chr17	60650576	60692839	CLUSTER4	2	+	+	uc002hfs.1:0-4419	uc010ddp.2:1236-5499,uc002izx.3:1224-5421,uc002jaa.3:1143-5340,uc002izz.3:1239-5436,uc010wpd.1:885-5082	ATAD5	TLK1,TLK2	Intrachromosomal	31313723	2	1	2	1.0	0.25	>4827479/1;pos=4382;strand=+,GCTGCTTTGAAGAAATCAAGTTCAGTACTCCTTCCCTGGCAACAGGAAAG,>4827479/2;pos=1241;strand=-,CTTCCCTGGCAACAGGAAAGGATAAATTCACAGAGGGAAGAGATAGAAAG	C1256400,C1256393,C1256402,C1256395,C1256394
chr6	155153831	155154543	chr6	155228864	155230000	CLUSTER36	2	+	+	uc003qqb.2:0-712	uc003qqc.1:371-1507	TIAM2	AK124484	Overlapping_Same	0	2	1	2	1.0	1.0	>2899218/1;pos=671;strand=+,AGAAAGCACAGAAACTGAGGGGACATAATCATCACTCAGTAGGCAAGATG	C2552228
chr1	204183010	204183220	chr1	204159470	204162042	CLUSTER47	2	-	-	uc001hat.1:0-210,uc001has.1:0-210	uc001har.2:116-712	GOLT1A	KISS1	Read_Through	-1668	2	1	2	0.5	1.0	>3835700/2;pos=116;strand=-,ATGATCTCCATCACCGAATGGCAGACCTCAAGGCACTTCTAGGACCTGCC	C0290381,C0290319
chrM	7587	8295	chrM	1709	4262	CLUSTER1	2	+	+	uc004cou.3:0-708	uc004cos.3:0-2553	X64709	TVAS5	Intrachromosomal_Complex	-3324	2	0	2	1.0	1.0		C2908439
chr7	35903141	35913385	chr4	120414488	120473178	CLUSTER3	2	+	+	uc003tey.2:0-363,uc011kau.1:0-596,uc011kav.1:0-517,uc010kxc.2:0-698,uc011kat.1:0-698	uc003ide.3:75-979	SEPT7	CR610292	Interchromosomal	None	2	0	2	0.027397260274	0.666666666667		C3422651,C2597388,C4294811,C4294573,C4295047
chr3	183415606	183470041	chr10	72631594	72640930	CLUSTER5	2	+	+	uc003fly.2:0-1344	uc009xqk.2:444-5015,uc001jrm.2:1131-5766	YEATS2	SGPL1,KIAA1252	Interchromosomal	None	2	0	2	0.133333333333	0.0454545454545		C2132745,C2132727
chr12	120933626	120933728	chr8	80831096	80915415	CLUSTER6	2	-	-	uc001tyk.1:0-102	uc003ybo.2:191-660,uc010lzr.2:877-1525,uc003ybp.2:236-705	BX537644	TPD52,MRPS28	Interchromosomal	None	2	0	2	0.285714285714	0.0487804878049		C0769703,C0769708,C0769704
chr16	2034150	2034477	chr14	65412532	65417132	CLUSTER9	2	+	-	uc002cob.2:0-327	uc001xhz.2:536-3390,uc010aqk.2:782-3636	GFER	RAB15	Interchromosomal	None	2	0	2	0.133333333333	0.0487804878049		C1037083,C1037085
chr17	37856254	37856564	chr17	61509666	61515531	CLUSTER12	2	+	-	uc010wek.1:0-310	uc002jaq.2:0-3013	ERBB2	CYB561	Intrachromosomal_Converging	23624751	2	0	2	0.0952380952381	1.0		C3761746
chr10	38680911	38691780	chr4	120414488	120473178	CLUSTER13	2	-	+	uc009xmd.1:0-418	uc003ide.3:75-979	CDC10L	CR610292	Interchromosomal	None	2	0	2	1.0	0.666666666667		C3065088
chr17	20771746	20771998	chr17	20861615	20885670	CLUSTER15	2	+	+	uc002gyg.1:0-252,uc002gyh.1:0-252	uc002gyk.1:698-1669	AK057473,BC041488	BC043529	Intrachromosomal	34629	2	0	2	0.666666666667	0.666666666667		C1236380,C1236381
chr17	60536019	60637487	chr1	243219612	243259424	CLUSTER16	2	+	-	uc010ddp.2:0-1098,uc002izz.3:0-1101,uc010wpd.1:0-747,uc002jaa.3:0-1005,uc002izx.3:0-1086	uc001hzq.1:469-3837,uc001hzq.1:359-3837	TLK1,TLK2	AL137733	Interchromosomal	None	2	0	2	0.285714285714	0.111111111111		C3267005,C1369653,C1369652,C1369562,C1369561,C1369523,C1369522,C3782430,C3782431,C3267006
chr13	100153728	100181848	chr13	45911304	45914319	CLUSTER17	2	+	-	uc001voj.1:0-593	uc001uzz.1:121-754	TM9SF2	FLJ44635	Intrachromsomal_Diverging	-54238430	2	0	2	0.0344827586207	0.0111111111111		C0827591
chr2	25016250	25040710	chr6	24544332	24570263	CLUSTER18	2	+	-	uc002rfq.1:0-1062,uc002rfo.1:0-1126,uc002rfp.1:0-1012	uc011djp.1:1935-6356,uc011djr.1:2383-6621,uc011djq.1:2474-6895,uc010jpt.1:893-5314,uc003neh.1:2383-6804,uc011djo.1:2095-6516	CENPO	KIAA0319	Interchromosomal	None	2	0	2	0.2	0.666666666667		C1670709,C1670632,C1670605,C1670630,C1670631,C1670618,C1670735,C1670629,C1670736,C1670670,C1670734,C1670733,C1670722,C1670683,C1670682,C1670681,C1670657,C1670684
chrM	12338	14645	chrM	8664	9990	CLUSTER20	2	+	+	uc004cox.3:0-2307	uc011mfi.1:0-1326	MTND5	OK/SW-cl.16	Intrachromosomal_Complex	-2347	2	0	2	1.0	1.0		C2920884
chr19	51214628	51220195	chr11	70313962	70742675	CLUSTER21	2	-	-	uc002psx.1:0-1095	uc001oqc.2:1024-10475	SHANK1	SHANK2	Interchromosomal	None	2	0	2	1.0	1.0		C1628019
chr7	45797642	45808617	chr4	120414488	120473178	CLUSTER26	2	-	+	uc003tnh.2:0-594,uc003tnf.3:0-594	uc003ide.3:75-979	SEPT13	CR610292	Interchromosomal	None	2	0	2	0.285714285714	0.666666666667		C2611381,C2611389
chr17	60536019	60637487	chr16	90196205	90204399	CLUSTER28	2	+	+	uc010ddp.2:0-1098,uc002izz.3:0-1101,uc010wpd.1:0-747,uc002jaa.3:0-1005,uc002izx.3:0-1086	uc002fqr.2:892-1780,uc002fqr.2:1002-1780	TLK1,TLK2	AX747598	Interchromosomal	None	2	0	2	0.285714285714	0.117647058824		C1369703,C1369702,C3267059,C1369614,C1369613,C3782434,C3782435,C1369527,C1369526,C3267060
chr17	60536019	60637487	chr1	700237	708487	CLUSTER32	2	+	-	uc010ddp.2:0-1098,uc002izz.3:0-1101,uc010wpd.1:0-747,uc002jaa.3:0-1005,uc002izx.3:0-1086	uc001abo.2:343-1316,uc001abo.2:453-1316	TLK1,TLK2	BC006361	Interchromosomal	None	2	0	2	0.285714285714	0.142857142857		C3267003,C1369559,C3267004,C3782428,C1369651,C1369650,C3782429,C1369560,C1369521,C1369520
chr14	21566471	21566808	chr17	39845127	39847897	CLUSTER34	2	-	+	uc001vzr.2:0-337	uc002hxj.2:0-1324,uc002hxk.2:0-1160	ZNF219	EIF1,A121/SUI1	Interchromosomal	None	2	0	2	1.0	1.0		C0837942,C0837941
chrM	14762	15888	chrM	1709	4262	CLUSTER35	2	+	+	uc004coy.2:0-1126	uc004cos.3:0-2553	cytochrome_b	TVAS5	Intrachromosomal_Complex	-10499	2	0	2	1.0	1.0		C2922722
chr1	224189609	224191356	chr4	120414488	120473178	CLUSTER39	2	+	+	uc001hog.1:0-1747	uc003ide.3:75-979	AK124970	CR610292	Interchromosomal	None	2	0	2	1.0	0.666666666667		C0299089
chr19	38924340	39052094	chr16	134273	136869	CLUSTER41	2	+	-	uc002oiv.1:0-5992,uc002oit.2:0-12753,uc002oiu.2:0-12738	uc010uua.1:1535-2059,uc010uuc.1:1486-1688,uc002cfq.2:1680-2743,uc002cfp.1:1642-3013,uc010uub.1:1557-2606,uc002cfr.2:1640-2703,uc002cfs.1:1812-2014	RYR1	C16orf35	Interchromosomal	None	2	0	2	1.0	0.142857142857		C1581444,C1581456,C1581454,C1581453,C1581428,C1581437,C1581429,C1581426,C1581427,C1581443,C1581452,C1581459,C1581458,C1581439,C1581457,C1581438,C1581442,C1581465,C1581466,C1581467,C1581441
chr19	10946685	10946983	chr16	31202063	31203097	CLUSTER48	2	-	+	uc002mpy.2:0-298	uc002ebh.2:1372-1998,uc002ebg.2:1340-1966,uc002ebj.2:1343-1969,uc002ebi.2:1378-2004,uc002ebf.2:1375-2001	TMED1	FUS/CHOP,FUS	Interchromosomal	None	2	0	2	0.133333333333	0.0232558139535		C1554961,C1554960,C1554963,C1554962,C1554964
chr12	53293559	53298868	chrM	1709	4262	CLUSTER51	2	-	+	uc009zmj.2:0-1083	uc004cos.3:0-2553	KRT8	TVAS5	Interchromosomal	None	2	0	2	0.0240963855422	1.0		C3116334
