#chrom5p	start5p	end5p	chrom3p	start3p	end3p	chimera_cluster_id	score	strand5p	strand3p	transcript_ids_5p	transcript_ids_3p	genes5p	genes3p	type	distance	total_frags	spanning_frags	unique_alignment_positions	isoform_fraction_5p	isoform_fraction_3p	breakpoint_spanning_reads	chimera_ids
chr8	125551266	125551329	chr17	38060850	38066177	CLUSTER30	182	-	-	uc010mdm.2:0-127,uc010mdm.2:0-63	uc010cwl.2:881-1319,uc002hth.2:1119-1557,uc010cwl.2:412-1319,uc002htg.2:1185-1623,uc010cwj.2:581-1470,uc002hth.2:366-1557,uc010cwi.2:351-789,uc002htg.2:631-1623,uc010cwi.2:51-789,uc010cwi.2:212-789,uc010cwm.2:439-1177,uc010cwk.2:908-1346,uc010cwj.2:412-1470,uc010wem.1:529-1560,uc010cwk.2:608-1346,uc010wem.1:983-1560,uc002hth.2:538-1557,uc010cwl.2:742-1319,uc010cwj.2:1032-1470,uc010cwj.2:240-1470,uc002hth.2:819-1557,uc010cwj.2:732-1470,uc010wem.1:1122-1560,uc002htg.2:885-1623,uc002htg.2:459-1623,uc010wem.1:698-1560,uc010cwk.2:240-1346,uc010cwm.2:600-1177,uc010cwk.2:769-1346,uc010cwm.2:739-1177,uc010wem.1:357-1560,uc010cwl.2:240-1319,uc010cwj.2:893-1470,uc002htg.2:1046-1623,uc002hth.2:980-1557,uc010wem.1:822-1560,uc010cwk.2:412-1346,uc010cwl.2:581-1319	TATDN1	GSDMB	Interchromosomal	None	182	158	151	0.989130434783	0.943005181347	>4743153/1;pos=19;strand=+,GGGGAGGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGC,>4899491/1;pos=19;strand=+,GNGGAGGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGC,>5140748/1;pos=19;strand=+,GGGGAGGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGGTTATCGGAAGG,>477752/1;pos=20;strand=+,GGGAGGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCT,>6329538/2;pos=21;strand=+,GGAGGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTG,>2813925/1;pos=21;strand=+,GGAGGTCCTCCATNCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTG,>7147894/1;pos=21;strand=+,GNAGGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTG,>6149136/1;pos=22;strand=+,GAGGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGA,>3666288/2;pos=22;strand=+,GAGGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGG,>3767909/1;pos=22;strand=+,GAGGTCCTCCATGTGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGA,>2946750/2;pos=22;strand=+,GAGGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGGTGG,>5658977/1;pos=23;strand=+,AGGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAA,>5860893/2;pos=24;strand=+,GGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAG,>5213177/1;pos=24;strand=+,GGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCAGAAGCTGAAG,>1379310/2;pos=24;strand=+,GGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGGTGAAG,>1742673/1;pos=24;strand=+,GGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTTTCGGGAGCTGAAG,>3611188/1;pos=25;strand=+,GTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGA,>1196626/2;pos=25;strand=+,GTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGGTGAAGA,>4827510/1;pos=26;strand=+,TCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGGAGAG,>8478107/1;pos=26;strand=+,TCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAG,>5105403/1;pos=27;strand=+,CCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGG,>3749895/2;pos=28;strand=+,CTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGGTGGAGAGGG,>8978320/1;pos=28;strand=+,CTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGG,>1084966/1;pos=29;strand=+,TCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGGA,>7887290/2;pos=29;strand=+,TCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGGG,>7225253/2;pos=29;strand=+,TCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGGAGAGGGG,>1257029/2;pos=29;strand=+,TCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGCGGGG,>2977307/2;pos=31;strand=+,CATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGGAAC,>3388417/2;pos=31;strand=+,CATGCGCAGTCATGAGTCGCTTCGAGTTTATCGGAAGGTGAAGAGGGAAC,>3627092/1;pos=31;strand=+,CATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGGGAC,>843889/2;pos=32;strand=+,ATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGGAACT,>7986520/2;pos=32;strand=+,ATGCGCAGTCATGAGNCGCTTCAAGTTTATCGGAAGCTGAAGAGGGAACT,>6132072/1;pos=32;strand=+,ATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGGTGAAGAGGGAACT,>4329177/1;pos=33;strand=+,TGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGGAACTA,>7432516/2;pos=33;strand=+,TGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGGAGAGGGGACTA,>651918/2;pos=33;strand=+,TGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGGAGAGGGAACTA,>423460/1;pos=33;strand=+,TGCACAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGGAACTA,>6819601/1;pos=33;strand=+,TGCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGGGACTA,>900742/2;pos=34;strand=+,GCGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGGAACTAC,>6681927/2;pos=35;strand=+,CGCAGTCATNAGTCGCTTCAAGTTTATCGGAAGGTGAAGAGGGAACTACC,>8030829/1;pos=35;strand=+,CGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGGAACTACC,>4092209/2;pos=35;strand=+,CGCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGGAGAGGGAACTACC,>707956/2;pos=36;strand=+,GCAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGGAACTACCC,>3077641/2;pos=37;strand=+,CAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGGCACTACCCC,>6871087/1;pos=37;strand=+,CAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGGAACTACCCT,>8898350/1;pos=37;strand=+,CAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGACGAGGGAACTACCCT,>4351461/2;pos=37;strand=+,CAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGGAGAGGGAACTACCCC,>7336954/2;pos=37;strand=+,CAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGGAGAGGGAACTACCCT,>5614110/2;pos=37;strand=+,CAGTCATGAGTCGCTTCAAGTTNATCGGAAGCTGAAGAGGGGACTACCCT,>4422905/1;pos=37;strand=+,CAGTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGGGACTACCCT,>1353736/1;pos=39;strand=+,GTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGGAACTACCCTTT,>8813345/2;pos=39;strand=+,GTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGGAACTGCCCTTT,>5157900/1;pos=39;strand=+,GTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGGGACTACCCTTT,>2428774/2;pos=39;strand=+,GTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGGGACTACACTTT,>3095126/1;pos=39;strand=+,GTCATGAGTCGCTTCAAGTTTATCGGAAGCTGGAGAGGGGACTACCCTTT,>3713697/1;pos=39;strand=+,GTCATGAGTCGCTTCAAGTTTATCGGAAGCTGAAGAGGGAAATACCCTTT	C2729233,C2729228,C2729224,C2729219,C2729216,C2729217,C2729214,C2729173,C2729172,C2729171,C2729170,C2729177,C2729198,C2729210,C2729230,C2729194,C2729179,C2729196,C2729193,C2729192,C2729236,C2729244,C2729215,C2729246,C2729231,C2729169,C2729245,C2729208,C2729178,C2729241,C2729240,C2729243,C2729242,C2729201,C2729205,C2729204,C2729207,C2729206,C2729223,C2729222,C2729221,C2729189,C2729164,C2729218,C2729225,C2729167,C2729182,C2729183,C2729181,C2729187,C2729184
chr17	76778284	76778376	chr8	117657056	117768258	CLUSTER45	16	-	-	uc002jvw.2:0-92,uc002jvw.2:0-175	uc003yob.2:741-2056,uc003yob.2:809-2056,uc003yob.2:941-2056,uc003yoa.2:0-1273,uc011lhz.1:0-1046	CYTH1	EIF3H	Interchromosomal	None	16	1	16	0.571428571429	1.0	>7072312/2;pos=34;strand=+,GAGGACGACAGCTACGATCATTCCATCGGAAAGAGGTCGAAAATGTACAG	C1167265,C1167251,C1167255,C1167254,C1167256,C1167245,C1167264,C1167243
chr5	139781429	139825560	chr5	141232683	141234001	CLUSTER54	8	+	-	uc003lfp.2:0-1237,uc003lfr.2:0-1270,uc003lfr.2:0-1365,uc003lfo.2:0-1365,uc003lfo.2:0-1270,uc003lfq.1:0-1270,uc010jfk.2:0-1270,uc003lfs.1:0-1270,uc003lfs.1:0-1365,uc003lfp.2:0-1332,uc003lfq.1:0-1365,uc010jfk.2:0-1365	uc003llp.2:3436-4754	ANKRD17,ANKHD1-EIF4EBP3,ANKHD1	PCDH1	Intrachromosomal_Converging	1380621	8	3	8	0.242424242424	0.666666666667	>1905896/1;pos=3455;strand=-,ACAAAGACCTTCGCCCTTTGCCTGATGTCGCCATGACAGGCACATGTACC,>5634251/2;pos=1234;strand=+,TTCAAAGAAAGTGCTCTAACACTTGCTTGCTACAAAGACCTTCGCCCTTT,>4687677/2;pos=1244;strand=+,GTGCTCTAACACTTGCTTGCTACAAAGACCTTCGCCCTTTGCCTGATGTC	C1817662,C1817670,C1817664,C1817665,C2690695,C2690694,C1817697,C1817735,C1817671,C1817663,C1817734,C1817698
chr4	76649460	76649795	chr4	76567955	76587233	CLUSTER4	7	-	-	uc010iiy.2:0-335	uc003hir.2:141-4272,uc003his.2:276-4407,uc003hit.2:276-4308	AK311578	G3BP2	Read_Through	-50354	7	2	7	1.0	0.388888888889	>8037642/1;pos=159;strand=-,GTGACAGCATTTGACATTGTGCAGCAAAGAAATGGTTATGGAGAAGCCCA,>6782726/2;pos=152;strand=-,GGCCAACGTGACAGCATTTGACATTGTGCAGCAAAGAAATGGTTATGGAG	C2684074,C2684076,C2684078
chr17	60536019	60637487	chr1	243219612	243260601	CLUSTER23	7	+	-	uc010ddp.2:0-1098,uc002izz.3:0-1101,uc010wpd.1:0-747,uc002jaa.3:0-1005,uc002izx.3:0-1086	uc001hzq.1:359-3837	TLK1,TLK2	AL137733	Interchromosomal	None	7	1	7	0.583333333333	0.636363636364	>4812369/1;pos=1049;strand=+,GATGTGTGACAATGAGCAAGAAACTCCTTATAGAAAAGATGATGATTATT	C2595602,C1133008,C1133029,C1132991,C2976858
chr17	60536019	60637487	chr3	197907626	197935258	CLUSTER37	7	+	+	uc010ddp.2:0-1098,uc002izz.3:0-1101,uc010wpd.1:0-747,uc002jaa.3:0-1005,uc002izx.3:0-1086	uc011buq.1:196-1497	TLK1,TLK2	FAM157A	Interchromosomal	None	7	1	7	0.583333333333	0.583333333333	>4812369/1;pos=1049;strand=+,GATGTGTGACAATGAGCAAGAAACTCCTTATAGAAAAGATGATGATTATT	C2976871,C2595617,C1133004,C1133043,C1133024
chr17	60536019	60637487	chr1	700237	709660	CLUSTER42	7	+	-	uc010ddp.2:0-1098,uc002izz.3:0-1101,uc010wpd.1:0-747,uc002jaa.3:0-1005,uc002izx.3:0-1086	uc001abo.2:343-1316	TLK1,TLK2	BC006361	Interchromosomal	None	7	1	7	0.583333333333	0.636363636364	>4812369/1;pos=1049;strand=+,GATGTGTGACAATGAGCAAGAAACTCCTTATAGAAAAGATGATGATTATT	C2595601,C2976856,C1133027,C1133007,C1132989
chr4	77507293	77507622	chr4	77631309	77704403	CLUSTER19	6	+	+	uc011cby.1:0-329	uc011cbx.1:1276-11016,uc011cbz.1:245-3878	AK097800	SHROOM3,hShrmL	Overlapping_Complex	0	6	1	6	1.0	0.857142857143	>4807918/1;pos=298;strand=+,AATGGACCTGCCTGGGCATAGACTTCCTTAAGAGATGTGTGCACAGACCC	C3111632,C3111633
chr17	38465446	38465538	chr8	79510593	79515484	CLUSTER77	6	+	+	uc002huk.1:0-92	uc003ybb.2:368-2053,uc003yba.2:368-2182	RARA	PKIA	Interchromosomal	None	6	1	6	0.4	1.0	>7426133/1;pos=66;strand=+,GCCCCCTGCCAGCACACACCTGAGCAGTCCCTGCTATGTGGATATTTGGT	C1088098,C1088097
chr7	77325213	77326662	chr7	77313168	77314643	CLUSTER17	6	-	-	uc003ugj.1:0-1449	uc003ugk.3:0-525	BC037783	AF290475	Overlapping_Complex	0	6	0	6	1.0	1.0		C2045346
chr3	4418014	4508954	chr3	37094117	37170640	CLUSTER22	6	-	-	uc011ast.1:0-642,uc003bpz.1:0-1038,uc011ass.1:0-963,uc010hby.1:0-978	uc003cgr.2:703-3112,uc003cgs.3:513-2922,uc003cgt.3:513-2850	SUMF1	LRRFIP2	Intrachromosomal_Complex	32585162	6	4	5	0.315789473684	0.285714285714	>7212604/1;pos=1011;strand=+,GAAAGGTGGATCCTACATGTGCCATAGGGCAGAGGCAAGGCTGGCAGCAA,>2123328/1;pos=996;strand=+,GAAAGACCGAGTGAAGAAAGGTGGATCCTACATGTGCCATAGGGCAGAGG,>4946235/1;pos=998;strand=+,AAGACCGAGTGAAGAAAGGTGGATCCTACATGTGCCATAGGGCAGAGGCA	C3073904,C3073886,C3073880,C3073883,C1644872,C2664912,C1644865,C2664917,C2664914,C1644876,C3073899,C3073907
chr20	37591000	37597857	chr20	32957200	33099197	CLUSTER5	5	+	+	uc010zwa.1:0-184,uc010zwb.1:0-184,uc002xjh.2:0-184,uc010zwc.1:0-184	uc010zuj.1:94-6236,uc010geu.1:94-6501,uc002xak.2:94-6378	DHX35	Itch,ITCH	Intrachromosomal_Complex	-4491802	5	3	5	0.833333333333	0.5	>2286792/2;pos=104;strand=-,CTGCCGGTATTCAAGGTACCATGCATTTCACAGTGGCCTTGTGGAGACAA,>6041412/1;pos=105;strand=-,TGCCGGTATTCAAGGTACCATGCATTTCACAGTGGCCTTGTGGAGACAAC,>2821158/2;pos=114;strand=-,TCAAGGTACCATGCATTTCACAGTGGCCTTGTGGAGACAACGCCTTAACC	C3043728,C3043722,C3043723,C3043720,C3043727,C3043733,C3043725,C1484848,C3043732,C3043730,C1484851,C1484850
chr20	19780218	19780391	chr20	19870210	19983100	CLUSTER35	5	+	+	uc002wrm.1:0-173	uc010gcu.1:0-2944,uc002wro.1:0-4243	BC090059	RIN2	Read_Through	79272	5	3	5	1.0	1.0	>7834246/2;pos=129;strand=+,GGCTGAACTGCAGTGGGAGAGGAGAAGAGATGCTGGCGTGAAGGGGAGTC,>2013851/1;pos=143;strand=+,GGGAGAGGAGAAGAGATGCTGGCGTGAAGGGGAGTCCCCGGCGTGCAGTG,>6705769/1;pos=153;strand=+,AAGAGATGCTGGCGTGAAGGGGAGTCCCCGGCGTGCAGTGGAGCCTCGCT	C1469299,C1469301
chr14	100002352	100070727	chr14	99864084	99880271	CLUSTER76	5	-	-	uc010avr.2:0-1297	uc001ygf.2:845-2688,uc001ygc.2:1019-2886,uc001ygd.2:845-1429,uc001ygc.2:845-2886	CCDC85C	SETD3	Read_Through	-30377	5	3	5	0.555555555556	0.333333333333	>7508165/2;pos=838;strand=-,GGCTGCTGGAGGGTGACAAGCTCCTCGCACAGACCCATCCTCATGCCAAC,>7210902/1;pos=1255;strand=+,GAGCAAAGTGAGGCTGCTGGAGGGTGACAAGCTCCTCGCACAGACCCATC	C2514368,C2514364,C2514366,C2514367
chr22	42076248	42084913	chr12	66516850	66522893	CLUSTER43	4	-	-	uc003bav.2:0-236	uc010ssx.1:706-1872	NHP2L1	TMBIM4	Interchromosomal	None	4	1	4	0.0213903743316	0.666666666667	>8999271/1;pos=191;strand=+,CAGCAGTCATGTAACTATAAGCAGCTTCGGAAAGGAGCCAATGAGGGTAA	C1622578
chr20	44483798	44486035	chr12	78786	88749	CLUSTER74	4	-	+	uc010zxe.1:0-342,uc002xqa.1:0-342	uc010sdb.1:0-865	hNAACTE,ACOT8	DKFZp434K1323	Interchromosomal	None	4	1	4	0.142857142857	1.0	>8651582/2;pos=312;strand=+,CACTCCCTGCACTGCTACTTTGTTCGGGCAGGCACCATGACTCCTGTGAG	C1487875,C3046009
chr1	147931724	147931980	chr1	145004781	145005286	CLUSTER0	4	-	+	uc001eqo.1:0-419,uc009wjx.1:0-256,uc009wjz.1:0-256,uc009wjy.1:0-256,uc001eql.2:0-256	uc001emi.3:0-505	FLJ39739,BC110832	BC065231	Intrachromosomal_Converging	-2829840	4	0	4	1.0	1.0		C2378135,C0123195,C0123193,C2378133,C2378134
chr8	145625382	145628620	chr4	103717134	103747793	CLUSTER12	4	-	-	uc003zck.1:0-1329	uc003hwl.2:125-2134,uc003hwj.2:125-2138,uc003hwr.2:161-2170,uc011ceu.1:357-2366,uc003hwp.2:207-2216,uc003hwo.2:214-2223	CPSF1	UBE2D3	Interchromosomal	None	4	0	4	0.666666666667	0.0493827160494		C2184899,C2184898,C2184897,C2184895,C2184974,C2184900
chr6	119234460	119256303	chr6	119135854	119191359	CLUSTER20	4	-	-	uc003pyh.2:0-1292	uc011ebm.1:0-2451	MCM9	MCM9	Read_Through	-40404	4	0	4	0.666666666667	1.0		C1965558
chr8	145625382	145628620	chr14	24607683	24608175	CLUSTER24	4	-	+	uc003zck.1:0-1329	uc001wmh.2:676-1168	CPSF1	PSME1	Interchromosomal	None	4	0	4	0.666666666667	0.039603960396		C2184724
chr1	143744201	143744587	chr1	145004781	145005286	CLUSTER31	4	-	+	uc009whx.2:0-386,uc001ejr.3:0-386,uc001ejp.3:0-386,uc009why.2:0-386	uc001emi.3:0-505	FLJ39739	BC065231	Intrachromsomal_Diverging	1260193	4	0	4	1.0	1.0		C2377769,C2377770,C0120466,C0120465
chr1	149576453	149576700	chr1	145004781	145005286	CLUSTER56	4	+	+	uc001esk.3:0-247,uc009wlc.2:0-247,uc009wld.2:0-247,uc009wlb.1:0-539,uc001esl.3:0-247	uc001emi.3:0-505	BC110832,LOC728855	BC065231	Intrachromosomal_Complex	-4571166	4	0	4	0.444444444444	1.0		C2378272,C0123699,C0123701,C2378271,C2378273
chr1	144340526	144340773	chr1	145004781	145005286	CLUSTER65	4	-	+	uc001ekv.2:0-247,uc001ekr.3:0-247,uc001ekt.3:0-247	uc001emi.3:0-505	LOC728855	BC065231	Intrachromsomal_Diverging	664007	4	0	4	0.444444444444	1.0		C0120490,C0120496,C0120494
chrM	10579	12138	chrM	1709	4262	CLUSTER78	4	+	+	uc004cov.3:0-1559	uc004cos.3:0-2553	STRF6	TVAS5	Intrachromosomal_Complex	-6316	4	0	4	1.0	1.0		C2289333
chr8	124084920	124096580	chr8	81550769	81733850	CLUSTER2	3	+	-	uc003ypp.1:0-608,uc011lih.1:0-492,uc011lig.1:0-608,uc003ypq.1:0-492,uc003ypo.1:0-608	uc003yby.1:211-4302	WDR67	ZNF704	Intrachromsomal_Diverging	-42297903	3	2	3	0.115384615385	0.375	>6569617/2;pos=227;strand=-,ATACAGAAGGTGGGGAGCATTAAGCGGGAAATGACCTTCACATTTCAGTC,>742782/2;pos=15;strand=-,AGCTGAATATTCGCCAGTCTGTGGGTATACAGAAGGTGGGGAGCATTAAG	C2151155,C2151171,C3443339,C2151163,C3443347
chr17	17716682	17721688	chr17	17714665	17715370	CLUSTER26	3	-	-	uc002grt.1:0-3385,uc002grs.1:0-3123,uc002grq.1:0-3761,uc002grp.1:0-2293,uc002gru.1:0-3407,uc002grr.1:0-3717,uc002grq.1:0-3873,uc002grs.1:0-3235,uc002grr.1:0-3829,uc002gru.1:0-3295,uc002grt.1:0-3497,uc002grp.1:0-2181	uc002gro.3:0-517	SREBF1	SREBP-1	Read_Through	-15	3	2	3	0.12	1.0	>4804152/2;pos=2254;strand=+,CGCAGTCTGAGGCGGCGGGCAGGCCCCGGTGGCAAAGGAGCTGATGGATG,>3806306/1;pos=2269;strand=+,CGGGCAGGCCCCGGTGGCAAAGGAGCTGATGGATGTGCTGACTAGTGAGA	C1001360,C1001361,C0996591,C0996590,C1005685,C1005684,C1005889,C1005888,C0996211,C0996212,C1006303,C1006302
chr1	143915748	143916308	chr1	206557369	206628046	CLUSTER70	3	+	+	uc010oxm.1:0-560	uc010prv.1:0-2493	RP3-365I19.1-001	SRGAP2	Intrachromosomal	62462891	3	2	3	0.214285714286	1.0	>6471810/1;pos=516;strand=+,AAAAGGATAAGGAGATCATAGCAGAGTACGATACTCAGGTCAAAGAGTAA,>4578686/1;pos=530;strand=+,ATCATAGCAGAGTACGATACTCAGGTCAAAGAGTAAAGAAGTCGGCCAGC	C2771224
chr14	50234787	50249312	chr8	121547986	121561198	CLUSTER1	3	+	-	uc001wwx.2:0-1496	uc010mdg.2:1362-4973	KLHDC2	SNTB1	Interchromosomal	None	3	1	3	0.0857142857143	1.0	>6192561/1;pos=1458;strand=+,AATACTAATATTTTCAGTTCAACCAAAATCTCTTGTACGGCTGGTCCATT	C0751037
chr1	153934696	153935789	chr1	153920154	153927642	CLUSTER51	3	-	-	uc001fdj.2:0-1077,uc001fdl.2:0-783,uc001fdk.2:0-405,uc001fdh.2:0-486,uc001fdi.2:0-613	uc010ped.1:223-2582	SLC39A1	CRTC2	Read_Through	-545	3	1	3	0.0140186915888	0.136363636364	>916978/2;pos=16;strand=-,CATAGATGAGGCCCTGGCAGCCTTGCACGTGACGTTACAGGCCCAAAAAC	C0136172,C0137121,C0136882,C0136644,C0136408
chr1	241803184	241803701	chr1	241792169	241799232	CLUSTER8	3	-	-	uc001hza.2:0-517,uc001hzc.2:0-517	uc001hzd.2:0-7063	OPN3	CHML	Overlapping_Complex	0	3	0	3	0.214285714286	1.0		C0202728,C0202731
chrUn_gl000220	112025	156152	chr22	35777087	35790194	CLUSTER15	3	+	+	uc011mft.1:0-311	uc003ant.1:0-1549	LOC100008587	HMOX1	Interchromosomal	None	3	0	3	1.0	1.0		C3471023
chr2	10262735	10269281	chr2	10281981	10351856	CLUSTER34	3	+	+	uc002rah.2:0-1207	uc002rai.1:260-1901	RRM2	C2orf48	Read_Through	9960	3	0	3	0.0138888888889	1.0		C1349495
chr8	145625382	145628620	chr3	184025145	184026840	CLUSTER41	3	-	+	uc003zck.1:0-1329	uc011brk.1:1782-2636,uc003fnn.1:2067-2921,uc011brj.1:1771-2625	CPSF1	PSMD2	Interchromosomal	None	3	0	3	0.6	0.0126050420168		C2184971,C2184972,C2184893
chr19	10946685	10946983	chr16	31202284	31203097	CLUSTER71	3	-	+	uc002mpy.2:0-298	uc002ebi.2:1479-2004,uc002ebg.2:1441-1966,uc002ebh.2:1473-1998,uc002ebj.2:1444-1969,uc002ebf.2:1476-2001	TMED1	FUS/CHOP,FUS	Interchromosomal	None	3	0	3	0.2	0.0145631067961		C1255431,C1255430,C1255432,C1255428,C1255429
chr20	62496590	62505169	chr20	62559688	62565394	CLUSTER10	2	+	+	uc002yha.2:0-442,uc002ygy.2:0-442,uc002ygz.2:0-442,uc002yhd.2:0-442,uc011abl.1:0-373,uc002yhb.2:0-442,uc002yhc.2:0-442	uc002yhf.2:159-3239,uc002yhg.1:159-1600,uc002yhh.2:879-4033	TPD52L2	DNAJC5,FLJ00118	Read_Through	3629	2	2	2	0.046511627907	0.0454545454545	>7460938/2;pos=161;strand=-,CATGACGTGCAGGTCTCTAGCGCAATAGCCTAACATGGCAGACCAGAGAC,>923645/1;pos=166;strand=-,CGTGCAGGTCTCTAGCGCAATAGCCTAACATGGCAGACCAGAGACAGCGC	C1524131,C1525091,C1524133,C1524370,C1524135,C1524613,C3051091,C1525089,C1523896,C1523894,C1523892,C1524374,C1524852,C1524850,C3051087,C1524611,C1524372,C3051089,C1525087,C1524848,C1524609
chr9	136210980	136214972	chr9	136197553	136201437	CLUSTER75	2	-	-	uc004cdc.2:0-646	uc004cdb.3:172-2315	MED22	SURF6	Read_Through	-4708	2	2	2	0.333333333333	0.047619047619	>1032300/1;pos=177;strand=-,GAGGAGTATTACTCGTCCAGCTGGCAAAACTCAAGGCTCAGAAACTGCAG,>863144/2;pos=176;strand=-,GGAGGAGTATTACTCGTCCAGCTGGCAAAACTCAAGGCTCAGAAACTGCA	C2248242
chr5	69697280	69697495	chr5	68860927	68876221	CLUSTER6	2	+	+	uc011cro.1:0-215	uc003jwz.3:180-2102,uc003jww.1:38-2015,uc003jwx.3:38-1960,uc011cre.1:180-2065,uc003jwy.3:278-2200	SMA4	GTF2H2,GTF2H2D,GTF2H2C	Intrachromosomal_Complex	-821058	2	1	2	0.2	0.333333333333	>8222560/2;pos=52;strand=-,TCTAGCTCAAGATTATTGAATAATAAAATACAGTTTTGAAAAAAATGGAT	C3117933,C3117932,C3117935,C3117934,C3117942
chr5	69697280	69697495	chr5	69716076	69720974	CLUSTER29	2	+	+	uc011cro.1:0-215	uc003jza.3:20-1870,uc011crp.1:162-2047,uc003jzb.3:162-2084	SMA4	GTF2H2B,GTF2H2,GTF2H2C	Overlapping_Same	0	2	1	2	0.2	0.666666666667	>8222560/2;pos=34;strand=-,TCTAGCTCAAGATTATTGAATAATAAAATACAGTTTTGAAAAAAATGGAT	C3117943,C3117937,C3117936
chr5	69697280	69697495	chr5	70330953	70358623	CLUSTER33	2	+	-	uc011cro.1:0-215	uc011crt.1:177-1911,uc003kaz.2:35-1886,uc003kay.1:35-830,uc003kau.3:275-2046,uc003kav.3:177-1948	SMA4	GTF2H2	Intrachromosomal_Converging	238154	2	1	2	0.2	0.125	>8222560/2;pos=289;strand=-,TCTAGCTCAAGATTATTGAATAATAAAATACAGTTTTGAAAAAAATGGAT	C3117939,C3117938,C3117944,C3117940,C3117941
chr19	39805995	39811489	chr19	39797457	39805976	CLUSTER40	3	-	-	uc010egm.1:0-163	uc002okw.2:0-3131	BC110060	LRFN1	Read_Through	-18	3	0	2	1.0	1.0		C2619435
chr9	19378359	19379616	chrM	1709	4262	CLUSTER3	2	-	+	uc003znw.1:0-496	uc004cos.3:0-2553	RPS6	TVAS5	Interchromosomal	None	2	0	2	1.0	1.0		C2193816
chr12	52626954	52642709	chrM	1709	4262	CLUSTER7	2	+	+	uc001saa.1:0-1701	uc004cos.3:0-2553	KRT7	TVAS5	Interchromosomal	None	2	0	2	1.0	1.0		C0593757
chr20	47364346	47444420	chr20	34213968	34215335	CLUSTER9	2	-	-	uc002xtw.1:0-313	uc002xdc.2:743-1449	PREX1	CPNE1	Intrachromosomal	-13021516	2	0	2	0.0444444444444	0.0714285714286		C1490388
chr16	2034150	2034477	chr14	65412532	65417132	CLUSTER11	2	+	-	uc002cob.2:0-327	uc001xhz.2:536-3390,uc010aqk.2:782-3636	GFER	RAB15	Interchromosomal	None	2	0	2	0.0909090909091	0.027397260274		C0866867,C0866868
chr19	1438363	1440492	chrM	1709	4262	CLUSTER13	2	+	+	uc002lsq.1:0-609,uc002lsp.1:0-530	uc004cos.3:0-2553	RPS15	TVAS5	Interchromosomal	None	2	0	2	1.0	1.0		C1221093,C1220784
chr12	50677203	50677353	chr17	26941459	26971205	CLUSTER14	2	-	-	uc010sms.1:0-150,uc010smr.1:0-150,uc001rwj.3:0-150,uc001rwk.3:0-150	uc002hbv.2:167-1579,uc010crr.1:167-1389,uc002hbu.2:167-7429	LIMA1	KIAA0100	Interchromosomal	None	2	0	2	0.0350877192982	0.0147058823529		C0587842,C0587841,C0587840,C0587837,C0587839,C0587838,C2858806,C2858807,C2858804,C2858805,C2858808,C2858809
chr17	76000251	76000291	chr17	76008084	76027923	CLUSTER16	2	+	+	uc010wto.1:0-40	uc002juc.2:55-439	septin_9/TNRC6C_fusion	TNRC6C	Read_Through	26	2	0	2	1.0	0.666666666667		C2987327
chr5	180326077	180374755	chr6	34212608	34214007	CLUSTER18	2	+	+	uc010jll.2:0-1150	uc011dsp.1:408-1807,uc003oiu.2:478-1877,uc011dso.1:524-1923,uc003oiy.2:370-1769,uc003oiw.2:445-1844,uc003ojd.2:278-1677,uc003ojc.2:448-1847,uc003oja.2:726-2125,uc003oiv.2:559-1958,uc010jvl.2:293-1692,uc003oiz.2:759-2158,uc003oit.2:592-1991,uc003oix.2:484-1883	BTNL8	HMGA1	Interchromosomal	None	2	0	2	1.0	0.0168067226891		C2694932,C2694933,C2694934,C2694935,C2694936,C2694937,C2694938,C2694939,C2694944,C2694941,C2694940,C2694943,C2694942
chr11	133826586	133826880	chr14	35522484	35552587	CLUSTER21	2	-	+	uc001qgx.3:0-294	uc001wsp.2:555-3253,uc001wsq.2:225-2923	IGSF9B	FAM177A1	Interchromosomal	None	2	0	2	1.0	0.0645161290323		C0491719,C0491720
chr17_ctg5_hap1	266212	347238	chr17	45099216	45105726	CLUSTER25	2	-	+	uc010wwm.1:0-1574,uc010wwo.1:0-1534,uc010wwn.1:0-1491,uc010wwl.1:0-1666	uc010wki.1:1031-1327	NSF	LRRC37A2	Interchromosomal	None	2	0	2	1.0	0.4		C2991207,C2991193,C2991221,C2991179
chr1	6484848	6500500	chr11	130096576	130184607	CLUSTER27	2	+	-	uc001amy.2:0-842	uc001qfx.2:0-3943,uc001qga.2:0-2563,uc001qgb.3:0-9337,uc001qgc.1:0-2486	ESPN	ZBTB44	Interchromosomal	None	2	0	2	0.166666666667	1.0		C0026078,C0026079,C0026076,C0026077
chrM	12338	14645	chrM	8664	9990	CLUSTER28	2	+	+	uc004cox.3:0-2307	uc011mfi.1:0-1326	MTND5	OK/SW-cl.16	Intrachromosomal_Complex	-2347	2	0	2	1.0	1.0		C2298231
chr3	23958639	23960054	chrM	1709	4262	CLUSTER32	2	+	+	uc011awj.1:0-331	uc004cos.3:0-2553	EC45	TVAS5	Interchromosomal	None	2	0	2	0.0869565217391	1.0		C3079237
chrX	70503042	70503571	chr16	72816788	72822747	CLUSTER36	2	+	-	uc004dzp.2:0-529,uc004dzo.2:0-529,uc004dzn.2:0-529,uc011mpv.1:0-529	uc002fcl.2:7517-13476,uc002fck.2:10100-16059	NONO	ZFHX3	Interchromosomal	None	2	0	2	0.0454545454545	0.333333333333		C2325546,C2325547,C2324282,C2324283,C2324924,C2324923,C3476160,C3476159
chrM	5855	7427	chrM	1709	4262	CLUSTER38	2	+	+	uc011mfh.1:0-1572	uc004cos.3:0-2553	BC018860	TVAS5	Adjacent_Complex	-1592	2	0	2	1.0	1.0		C3465084
chr17_ctg5_hap1	266212	347238	chr17	62850488	62888718	CLUSTER39	2	-	-	uc010wwm.1:0-1574,uc010wwo.1:0-1534,uc010wwn.1:0-1491,uc010wwl.1:0-1666	uc002jey.2:3225-5749,uc010wqf.1:413-2937	NSF	LRRC37A3	Interchromosomal	None	2	0	2	1.0	0.285714285714		C2991222,C2991208,C2991217,C2991203,C2991189,C2991194,C2991175,C2991180
chr1	17034387	17046652	chr11	130096576	130184607	CLUSTER44	2	-	-	uc001azn.1:0-380,uc010ocj.1:0-366	uc001qfx.2:0-3943,uc001qga.2:0-2563,uc001qgb.3:0-9337,uc001qgc.1:0-2486	ESPNP,ESPN	ZBTB44	Interchromosomal	None	2	0	2	0.666666666667	1.0		C0041200,C0041197,C2754338,C2754339,C2754337,C2754336,C0041198,C0041199
chrM	12338	14645	chrM	1709	4262	CLUSTER46	2	+	+	uc004cox.3:0-2307	uc004cos.3:0-2553	MTND5	TVAS5	Intrachromosomal_Complex	-8075	2	0	2	1.0	1.0		C2295581
chr3	128968453	128991258	chr7	130146080	130148503	CLUSTER47	2	+	-	uc010htb.2:0-2438,uc003els.2:0-2257	uc003vqh.1:826-1732	COPG	COPG2	Interchromosomal	None	2	0	2	0.0238095238095	0.666666666667		C1711923,C2675805
chr3	57994127	58140655	chrX	79931683	80065233	CLUSTER48	2	+	-	uc010hnf.2:0-6864,uc003djk.2:0-6903,uc010hne.2:0-7029,uc003djj.2:0-6936,uc003djl.2:0-6461,uc003djm.2:0-6422	uc004edx.2:0-6069,uc004edy.2:0-6089,uc004edz.2:0-6030,uc004edv.2:0-6255,uc004edu.2:0-5745,uc004eea.2:0-5844,uc004edw.2:0-6119,uc004edt.2:0-6096,uc004eeb.2:0-5656	FLNB	BRWD3	Interchromosomal	None	2	0	2	0.0408163265306	1.0		C1696354,C2671313,C1696356,C2671315,C1696350,C2671317,C1696352,C2671319,C1696358,C2673448,C1698511,C1698513,C2673444,C1698515,C1698517,C2673450,C2673446,C1694187,C1694185,C2673452,C1694183,C1694181,C1700608,C1694189,C1700604,C2673454,C2671329,C2673456,C1696346,C1696344,C1700602,C2673458,C2671321,C1696348,C2671323,C1696360,C2671325,C1700606,C1700600,C1698509,C1694191,C1698507,C1698505,C1698503,C2671327,C1698501,C1700610,C1700612,C1700596,C1700598,C1694177,C1694175,C2673460,C1694179
chr17_ctg5_hap1	266212	347238	chr17	44377160	44415158	CLUSTER49	2	-	+	uc010wwm.1:0-1574,uc010wwo.1:0-1534,uc010wwn.1:0-1491,uc010wwl.1:0-1666	uc002ikg.2:2612-5174	NSF	LRRC37A	Interchromosomal	None	2	0	2	1.0	0.285714285714		C2991187,C2991215,C2991173,C2991201
chr12	6574056	6579843	chr12	6548167	6557903	CLUSTER50	2	-	-	uc001qok.2:0-485,uc001qoj.2:0-485	uc001qob.2:158-1344,uc009zel.1:1177-2363,uc001qoc.2:687-1873,uc009zem.1:687-1306	VAMP1	LOC678655	Read_Through	-10724	2	0	2	0.666666666667	1.0		C0493824,C0493814,C0493815,C0493818,C0493819,C0493821,C0493820,C0493825
chr10	133918313	133982537	chr16	719553	724170	CLUSTER52	2	+	+	uc009yba.1:0-2986,uc001lky.1:0-1080,uc001lkx.3:0-3637	uc002ciq.2:375-2556	JAKMIP3,DKFZp686B1027	RHOT2	Interchromosomal	None	2	0	2	1.0	0.047619047619		C0270963,C0270942,C2406836
chr1	205600760	205602000	chr17	7212934	7215780	CLUSTER53	2	-	+	uc001hcz.2:0-1240,uc001hcy.1:0-1240	uc002gft.2:145-1281,uc002gfr.2:117-1253,uc010vtu.1:84-922,uc002gfu.2:201-1337	ELK4	AK303306,EIF5A	Interchromosomal	None	2	0	2	0.5	0.153846153846		C0183545,C0183538,C0183532,C0183531,C0183530,C0183537,C0183536,C0183534
chr2	112101638	112252692	chr2	112526641	112596089	CLUSTER55	2	-	-	uc002the.2:0-496	uc002thi.2:2287-6308	LOC541471	ANAPC1	Intrachromosomal_Complex	273948	2	0	2	0.666666666667	0.0555555555556		C1398347
chr1	224301791	224302098	chr19	38866800	38873393	CLUSTER57	2	+	+	uc009xef.2:0-307,uc001hoh.2:0-307,uc010pvc.1:0-307	uc010efx.1:501-1580	FBXO28,KIAA0483	PSMD8	Interchromosomal	None	2	0	2	0.142857142857	0.2		C2390827,C2791928,C0189304
chr8	144921681	144922202	chr8	74858634	74868289	CLUSTER58	2	-	-	uc010mfm.2:0-541,uc003yzv.2:0-521,uc011lks.1:0-810,uc003yzy.2:0-553	uc003xzz.1:35-600,uc003yaa.1:97-662,uc003xzx.1:89-654,uc003xzy.1:228-793	NRBP2	TCEB1	Intrachromosomal	-70031424	2	0	2	0.25	0.0111111111111		C2171121,C2171120,C3450333,C2731107,C2171118,C2171119,C2171109,C2171108,C3450334,C3450336,C3450335,C2731110,C2171107,C2171106,C2731109,C2731108
chr9	37120469	37302228	chr9	37086665	37087992	CLUSTER59	2	+	+	uc011lqh.1:0-195	uc003zzp.1:540-1867	ZCCHC7	BC067112	Adjacent_Complex	-32476	2	0	2	0.4	0.166666666667		C3452068
chr17_ctg5_hap1	266212	347238	chr17	44594728	44633014	CLUSTER60	2	-	+	uc010wwm.1:0-1574,uc010wwo.1:0-1534,uc010wwn.1:0-1491,uc010wwl.1:0-1666	uc002ikn.1:2612-5174	NSF	LRRC37A2	Interchromosomal	None	2	0	2	1.0	0.285714285714		C2991216,C2991174,C2991202,C2991188
chr17	37856254	37856564	chr15	57210833	57580712	CLUSTER61	2	+	+	uc010wek.1:0-310	uc010bfs.2:0-3186,uc010ugn.1:0-2413,uc002aed.2:0-4711,uc002aea.2:0-4773,uc002aeb.2:0-4783,uc002aec.2:0-4701	ERBB2	TCF12	Interchromosomal	None	2	0	2	0.25	1.0		C2965504,C2965929,C2962714,C2962715,C2962716,C2962713
chr1	27860794	27930143	chr7	123181084	123190640	CLUSTER62	2	-	-	uc009vsy.2:0-6457	uc003vkr.2:52-1425,uc003vks.2:175-1548	AHDC1	NDUFA5	Interchromosomal	None	2	0	2	1.0	0.05		C2368246,C2368247
chr17	37856254	37856564	chrX	133903597	133930385	CLUSTER63	2	+	-	uc010wek.1:0-310	uc004exv.2:112-2700,uc004exq.2:0-3522,uc004exr.2:0-3465	ERBB2	FAM122B	Interchromosomal	None	2	0	2	0.25	1.0		C2965377,C2965381,C2965378
chr17_ctg5_hap1	266212	347238	chr17	43616529	43623042	CLUSTER64	2	-	-	uc010wwm.1:0-1574,uc010wwo.1:0-1534,uc010wwn.1:0-1491,uc010wwl.1:0-1666	uc002ijh.2:1032-1328,uc010wjv.1:1058-1354	NSF	LRRC37A2	Interchromosomal	None	2	0	2	1.0	0.285714285714		C2991218,C2991204,C2991172,C2991214,C2991200,C2991176,C2991186,C2991190
chr12	124824552	125020157	chr8	22463598	22477975	CLUSTER66	2	-	+	uc010taz.1:0-5823,uc010tay.1:0-5871	uc003xci.2:477-3970,uc003xch.2:195-3688	NCOR2	KIAA1967	Interchromosomal	None	2	0	2	0.0869565217391	0.0645161290323		C2881677,C2885162,C2885160,C2881680
chr17_ctg5_hap1	266212	347238	chr17_ctg5_hap1	197706	236005	CLUSTER67	2	-	-	uc010wwm.1:0-1574,uc010wwo.1:0-1534,uc010wwn.1:0-1491,uc010wwl.1:0-1666	uc010wwv.1:2612-5173,uc010wwg.1:2612-5173	NSF	LRRC37A2,LRRC37A	Read_Through	-25542	2	0	2	1.0	0.285714285714		C2991224,C2991225,C2991211,C2991210,C2991196,C2991197,C2991183,C2991182
chr14	91282519	91282761	chr11	47602077	47606115	CLUSTER68	2	-	+	uc001xyp.2:0-242	uc001nft.3:721-1676,uc001nga.2:215-958,uc010rhn.1:215-1326	TTC7B	NDUFS3,DKFZp586K0821	Interchromosomal	None	2	0	2	0.4	0.666666666667		C0769720,C0769719,C0769729
chr12	56510374	56511615	chr17	37883942	37884914	CLUSTER69	2	+	+	uc001sjo.2:0-582,uc001sjn.2:0-467	uc010cwb.2:3397-4369	RPL41	ERBB2	Interchromosomal	None	2	0	2	1.0	0.0344827586207		C0626476,C0627111
chr19	624719	633568	chr17	59489112	59490641	CLUSTER72	2	-	+	uc002lpf.1:0-1195	uc002izh.1:0-1529	POLRMT	C17orf82	Interchromosomal	None	2	0	2	0.222222222222	1.0		C1218342
chr17_ctg5_hap1	266212	347238	chr17_ctg5_hap1	1451566	1489863	CLUSTER73	2	-	+	uc010wwm.1:0-1574,uc010wwo.1:0-1534,uc010wwn.1:0-1491,uc010wwl.1:0-1666	uc010wyh.1:1032-3593	NSF	LRRC37A2	Intrachromsomal_Diverging	1101244	2	0	2	1.0	0.285714285714		C2991226,C2991184,C2991198,C2991212
