pegasus_folder	path_to_Pegasus_folder
hg	hg19.fa
hg_fai	hg19.fa.fai
gtf_file	Homo_sapiens.GRCh37.60.chr.gtf
sge_param	" -S /bin/sh -l mem=4G,time=10:: -cwd "
sample_type	breast_cancer
